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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAGgtactgcttttgctctttctcaatccatgttttttgttcttttctcactgtaactatgttgtgcttgattactaattggttccttgggtattatgctctag

Basic information

species Glycine max
transcript GLYMA16G25450.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 5'ss of exon 5
TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAGgtactgcttttgctctttctcaatccatgttttt-tgttcttttctcactgtaactatgttgtgct-tgattactaattggttccttgggtattatgctctag
|||||||||||||||||||||||||||||  | || || |||||||||    |||    |||  | |||     | | |         |  || | | | | |||     | |   ||    ||     | |  | | ||| |     
TATGCTCGTATTATCCAAAAGCTTGGCTTTGCTGCTAAGTTTAAGgtaactatttcaggcttgattaattttcatctgtgcaaatgcctaccattttcattctgtaagattgtacctaaatgtttaactcatttgcactataccag--

upper sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 6
TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAGgtactgcttttgctctttctcaatccatgttttttgttcttttctcactgtaactatgttgtgcttgattactaattggttccttgggtattatgctctag
|| |||||||||||||| ||||||||||| || || ||||| ||||||    |||    ||| ||  ||     | | |     | | |  ||   |   ||  |||  ||| |  |||| || ||   |   |    |   | ||
TACGCTCGTATTATCCAGAAGCTTGGCTTTCCTGCTAAATTCAAGgtaactatttcaagcttgcttgattttcatctgtg--catgtgcctaccaaatacattctgtaattg-tacctaactgtttaactcattgcactataccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789639|gb|BG652230.1|BG652230
EST:     TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG                         GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA
genomic: TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAGgtactgcttt ... tatgctctagGATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA
EST: gi|208239540|gb|GE038626.1|GE038626
EST:     TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG                         GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA
genomic: TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAGgtactgcttt ... tatgctctagGATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA
EST: gi|14258923|gb|BG881840.1|BG881840
EST:     TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG                         GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA
genomic: TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAGgtactgcttt ... tatgctctagGATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA
EST: gi|254320724|gb|GR827173.1|GR827173
EST:     TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAG                         GATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA
genomic: TATGCTCGTATTATCCAAAAGCTTGGCTTCCCAGCCAAATTTAAGgtactgcttt ... tatgctctagGATTTCAAAATTCAGAACATTGTCGGCTCTTGTGATGTCAAGTTCCCCATA