1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTCTACTACAGgtacatgaccatgtccattctaatcagccttaatgtgtgataagaacatagggagaatcacaacacaaaaactaaccattgtagttggagagtccaaact...
species | Glycine max |
transcript | GLYMA16G25200.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTTTACTACAG GTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGTEST: gi|197666163|gb|FD480429.1|FD480429
genomic: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTCTACTACAGgtacatgacc ... ttgtctacagGTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGT
EST: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTTTACTACAG GTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACEST: gi|213604005|gb|DB974187.1|DB974187
genomic: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTCTACTACAGgtacatgacc ... ttgtctacagGTTAATGACGCGCTTCATGATGAATCAGAGCAAGTAC
EST: CTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGCAC-ACTACAG GTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGTEST: gi|298173858|gb|HO017194.1|HO017194
genomic: CTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAG-TCTACTACAGgtacatgacc ... ttgtctacagGTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGT
EST: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTTTACTACAG GTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGTEST: gi|51337924|gb|CO981790.1|CO981790
genomic: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTCTACTACAGgtacatgacc ... ttgtctacagGTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGT
EST: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTTTACTACAG GTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGTEST: gi|209728318|gb|BW658530.1|BW658530
genomic: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTCTACTACAGgtacatgacc ... ttgtctacagGTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGT
EST: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTCTACTACAG GTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGTEST: gi|209716248|gb|BW657551.1|BW657551
genomic: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTCTACTACAGgtacatgacc ... ttgtctacagGTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGT
EST: CGGAGAAGTTTACTACAG GTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGTEST: gi|151405996|gb|EV275811.1|EV275811
genomic: CGGAGAAGTCTACTACAGgtacatgacc ... ttgtctacagGTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGT
EST: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTCTACTACAG GTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGTEST: gi|151405769|gb|EV275583.1|EV275583
genomic: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTCTACTACAGgtacatgacc ... ttgtctacagGTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGT
EST: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTCTACTACAG GTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGT
genomic: TCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTCTACTACAGgtacatgacc ... ttgtctacagGTTAATGACGCGCTTCATGATGAATCAGAGCAAGTACACTCTAGATGCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTATATAAATTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACAAGGCCAGCTCAAGATCCAAATGCCGGAGAAGTCTACTACAGgtacatgaccatgtccattctaatcagccttaatgtgtgataagaacatagggagaatcacaacacaaaaactaaccattgtagttggagagtccaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT