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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgtaatcatcaagttcatttttttatttgttatatagtcacctttccctctcaaattgaaggaataactgacatccttttgtcaaaatatttgcaaatattttcttatgtccaattctcag

Basic information

species Glycine max
transcript GLYMA16G24870.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24870.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g49220.2 (Oryza sativa), 5'ss of exon 6
GATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgta-atcatcaagttcatttttttatttgttatatagtcacctttccctctcaaattgaagga-ataactgacatccttt-tgtcaaaatatttgcaaatattttcttatgtccaattctcag
|| || |  |||||||| || |||||||||||||| |  ||||| || ||||||||||||||| | ||||||||  | |||||||||||||| ||||||||| ||| ||  || | |     |||   || | | |   | |||  ||  ||   ||    | ||    ||| |  ||| || ||                                     
GACATAGCTAGTGAGCACCCTGAGAGATTTTTTGTGGGGGAAATAGTGAGAGAAAAGATTTTTCTTCAGTATCGTCAAGAAATTCCATATGCTTGTCAGgtatatcttctggtgcttgcacctatcaattttgt-gcggcatttttctgccagcatgtgtcagatgtgcgactttgtttatgacag------------------------------------

upper sequence: GLYMA16G24870.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G66470.1 (Arabidopsis thaliana), 5'ss of exon 6
GATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgta-atcatcaagttcatttttttatttgttatatagtcacctttccctctcaaattgaaggaataactgacatccttttgtcaaaatatttgcaaatattttcttatgtccaattctcag
|||||||| || |||||||||||||||||||||||  |||| ||||||||||| || || ||||||||||| ||||||||| |||| ||||||||||||||| |    ||||||   ||| || | | ||   |          ||     |||     ||  | | | |       |||| || |     |                            
GATATTGTGAGCGAGCATCCAGAGAGATTTTTTGTTTCTGAGATTGTTAGAGAGAAAATATTTATGCAGTACCGAAATGAAGTTCCTTATGCATGTCAGgtacaatgacaagtttggtttcttttctcttgagt----------cctgtgaaaagccgtggccttattaatcaatcattgttaacactacag----------------------------

upper sequence: GLYMA16G24870.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g02120.t01 (Vitis vinifera), 5'ss of exon 6
GATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgtaa-----tcatcaagttcatttttttatttgttat-----atagtcacctttccc--tctcaaattgaagg--aataactgacatccttttgt------caaaatatttgcaaatattttcttatgtccaattctcag-----------------------
|| ||||| |||||||| || || ||||| ||||||| ||| ||||||||||||||||| || ||||| ||||| |||||| |||| |||||||||||||||      | || |  |  |  || || |   ||||     || || | | || ||  | |    ||| |    | |   ||    | | ||||        |  |  | | || ||   ||| |||    | | ||                         
GACATTGTTAGTGAGCACCCGGAAAGATTCTTTGTAGGTGAGATTGTTAGAGAAAAGATCTTCATGCAATATCGTAATGAAGTTCCTTATGCATGTCAGgtacatgcttgattatctctaccttcttgtgatttatgagacatggttatcctttccattttttggttgtattttattccttggttgcttattgtgccttttgatttcctagaaagtaacatctaatggaggagtgtcgtcccttgatttttgaatcctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018987|gb|CX705729.1|CX705729
EST:     GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAG                         GTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATCCAA
genomic: GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgtaatcatca ... caattctcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
EST: gi|58019195|gb|CX705937.1|CX705937
EST:     GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAG                         GTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
genomic: GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgtaatcatca ... caattctcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
EST: gi|214007313|gb|DB985849.1|DB985849
EST:     GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAG                         GTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA
genomic: GAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGgtaatcatca ... caattctcagGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAA