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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCAGTTGAGGGGTATGAGCCAATTGAATTTGTGCTTACAAAGATATGTGgtgaatgataccaactcacctagaaaattcagattctactattattcctcttgttctttatatgtatttaattaataggaagactgaacaagtatggtgattatgccaatggtattataacatttttcttttaactaccatttctgttgaatgaatgcctagctctgtttatttattgttgcag

Basic information

species Glycine max
transcript GLYMA16G24650.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24650.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g02560.t01 (Vitis vinifera), 5'ss of exon 15
GTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCAGTTGAGGGGTATGAGCCAATTGAATTTGTGCTTACAAAGATATGTGgtgaatgataccaactcacctagaaaattcagatt--ctactattattcctcttgttctttatatgtattta--attaataggaagactgaacaagtatggtgattatgccaatggtattataacatttttcttttaactaccatttctgttgaatgaatgcctagctctgtttatttattgttgcag
|||||  ||||||| |||| |||||||||||| |||| || || ||||| ||||| |||||||| ||| | |||   || ||||| || |||||| |      | | || |       || | || |   || || ||     | | |||    ||  ||  ||   | |  |  ||||| || || ||  ||                                                                                        
GTGAGAAGGCCCGTGATACTCCATATGAAGTTGATATTACTATTCCAGTAGAGGGTTATGAGCCCATTCAGTTTACTCTCACAAAAATGTGTGgtaagctcctcaatcttattactttaactgagttgaacttctctttgaaatatggttgcaaatgagtcctttccaatgttttgaagattggactagattg----------------------------------------------------------------------------------------