Sequence
atgc intronic sequence ATGC exonic sequenceCTGCTGGAGCTGGACTTACTGGAAGCAAAATGGCTAGGAGAGTTGGGGGTGTTGATGAGTTTGAATTCAAGGCTATAGGAGAAAACCATAACCAAGGCgtaggttttgatatctttcacatccctgttttcttgtgacattgcttgcttaaattgagctgtgatctatgtttctgtgtgtgcatatgtgaactttgtctcaccttgtacctatgcacctggttattatttcaaattagattcttgttgaacttctgcttgcag
Basic information
species | Glycine max |
transcript | GLYMA16G24310.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 6
CTGCTGGAGCTGGACTTACTGGAAGCAAAATGGCTAGGAGAGTTGGGGGTGTTGATGAGTTTGAATTCAAGGCTATAGGAGAAAACCATAACCAAGGCgtaggttttgatatctttcacatccctgttt---tcttgtgacattgc-ttgcttaaattgagctgtgatctatgtttctgtgtgtgcatatgtgaactttgtctcaccttgtacctatgcacctggttattatttcaaattagattcttgttgaacttctgcttgcag
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CTGCTGGAGCTGGGCTCACTGGGACGAAGATGGCTAGGAGAACTGGTGACATTGAAGAGTTTGAATTCAAAGCTATTGGAGAAAATCATAATCAAGGAgttagttttaaattcctgctgtttcatgttgaaatctctttgctctgcattgatctctttgttctttctttatttttcttgttggtgtaatag----------------------------------------------------------------------------
upper sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 6
CTGCTGGAGCTGGACTTACTGGAAGCAAAATGGCTAGGAGAGTTGGGGGTGTTGATGAGTTTGAATTCAAGGCTATAGGAGAAAACCATAACCAAGGCgtaggttttgatatctttcacatccctgttttcttgtgac-attgcttgcttaaattgagctgtgatctatgtttctgtgtgtgcatatgtgaactttgtctcaccttgtacctatgcacctggttattatttcaaattagattcttgttgaacttctgcttgcag
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CTGCTGGTGCTGGACTCACAGGGAGTAAAATGGCTAGAAGAACTGGAAGTGTCGATGAATTTGAGTTCAAAGCTATTGGAGAAAACCATAACCAAGGCgtgagtttct-tagcttctgttttccaatttctggggagttattactgtcttgca--gaggggtcacttacaagttctaacctggataagt---ttttttctttct------------------------------------------------------------
upper sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ22990 (Selaginella moellendorffii), 5'ss of exon 6
CTGCTGGAGCTGGACTTACTGGAAGCAAAATGGCTAGGAGAGTTGGGGGTGTTGATGAGTTTGAATTCAAGGCTATAGGAGAAAACCATAACCAAGGCgtaggttttgatatctttcacatccctgttttcttgtgacattgcttgcttaaattgagctgtgatctatgtttctgtgtgtgcatatgtgaactttgtctcaccttgtacctatgcacctggttattatttcaaattagattcttgttgaacttctgcttgcag
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CTGCTGGTGCTGGTTTAACGGGATCCAAAATGGCTAGAAGAATTGGTGATGTTGACGAGTTTGGTTTTGAGGCTATTGGAGACAACCATAATCAAGGAgtaggacctactactagtggtttttatg----ctgatagtttcgtttgtag------------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58016695|gb|CX703437.1|CX703437EST: TGTTGATGAG-TTGAATTTCAAGGCTATA-GAGAAAACCATAACCAAGGC AGACTAGGGGTTGAGATCTTAGTCTCTGGA-TTGTCTTTGAAAAAGGAAGA
genomic: TGTTGATGAGTTTGAA-TTCAAGGCTATAGGAGAAAACCATAACCAAGGCgtaggttttg ... ctgcttgcagAGACTAGGGGTTGAGATCTTAGTCTCTGGATTTGTCTTTG-AAAAGGAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGCTGGAGCTGGACTTACTGGAAGCAAAATGGCTAGGAGAGTTGGGGGTGTTGATGAGTTTGAATTCAAGGCTATAGGAGAAAACCATAACCAAGGCgtaggttttgatatctttcacatccctgttttcttgtgacattgcttgcttaaattgagctgtgatctatgtttctgtgtgtgcatatgtgaactttgtctcaccttgtacctatgcacctggttattatttcaaattagattcttgttgaacttctgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA