1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGCTGAATGTAAAGCAGTATTACAAGAAACTACTCAACTCATTGAGCACAAACTTGCAACCAATGGAAAGGAACTAAAGGCATCTTTTAATGCAGATGATgtaagatctgttcctttactcttgcagaagtaaattatacttcacccataaacatgaatcctgttgccaagtagactatctagtatgattgtcatgttgcattctgactttttccctgctttgcag
species | Glycine max |
transcript | GLYMA16G24270.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACTTGCAACCAATGGAAAGGAACTAAAGGCATCTTTTAATGCAGATGAT CTCGAAAAAGATGGAGACTTTATGTATTTAATTGCTGATGCTGCTGCTGTAEST: gi|192307850|gb|FG999329.1|FG999329
genomic: AACTTGCAACCAATGGAAAGGAACTAAAGGCATCTTTTAATGCAGATGATgtaagatctg ... tgctttgcagCTCGAAAAAGATGGAGACTTTATGTATTTAATTGCTGATGCTGCTGCTGTA
EST: TAAAGGCATCTTTTAATGCAGATGAT CTCGAAAAAGAT-GAGACTTTATGTATTTAATTGCTGATGCTGCTGCTGTAEST: gi|193700809|gb|FK636796.1|FK636796
genomic: TAAAGGCATCTTTTAATGCAGATGATgtaagatctg ... tgctttgcagCTCGAAAAAGATGGAGACTTTATGTATTTAATTGCTGATGCTGCTGCTGTA
EST: AACTTGCAACCAATGGAAAGGAACTAAAGGCATCTTTTAATGCAGATGAT CTCGAAAAAGATGGAGACTTTATGTATTTAATTGCTGATGCTGCTGCTGTAEST: gi|208140247|gb|GD936941.1|GD936941
genomic: AACTTGCAACCAATGGAAAGGAACTAAAGGCATCTTTTAATGCAGATGATgtaagatctg ... tgctttgcagCTCGAAAAAGATGGAGACTTTATGTATTTAATTGCTGATGCTGCTGCTGTA
EST: AACTTGCAACCAATGGAAAGGAACTAAAGGCATCTTTTAATGCAGATGAT CTCGAAAAAGATGGAGACTTTATGTATTTAATTGCTGATGCTGCTGCTGTA
genomic: AACTTGCAACCAATGGAAAGGAACTAAAGGCATCTTTTAATGCAGATGATgtaagatctg ... tgctttgcagCTCGAAAAAGATGGAGACTTTATGTATTTAATTGCTGATGCTGCTGCTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGAATGTAAAGCAGTATTACAAGAAACTACTCAACTCATTGAGCACAAACTTGCAACCAATGGAAAGGAACTAAAGGCATCTTTTAATGCAGATGATgtaagatctgttcctttactcttgcagaagtaaattatacttcacccataaacatgaatcctgttgccaagtagactatctagtatgattgtcatgttgcattctgactttttccctgctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG