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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAAGGCAGATAGGGGAGACTGCCCTGAATGAAGTGAGCTCCAGATCTCATCAGATTCTCAGACTGgtacttatgttcctatttttgtaattttgtccaagggaagagaactttacagcacctcatcgctaagattcctaaataatgtgattcttcttcag

Basic information

species Glycine max
transcript GLYMA16G24250.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24250.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os09g35890.1 (Oryza sativa), 5'ss of exon 7
CTCAAAGGCAGATAGGGGAGACTGCCCTGAATGAAGTGAGCTCCAGATCTCATCAGATTCTCAGACTGgtacttatgttcctatttttgtaattttgtccaagggaagagaactttacagcacctcatcgctaagattcctaaataatgtgattcttcttcag
||||||| ||||| ||||| |||||  |||||||||  ||||||||||||||||| || |||||  ||||  || || || |||     ||| ||  |     | || |||  |||   | |    |       | ||| |||      |  ||   ||  ||
CTCAAAGACAGATTGGGGAAACTGCTATGAATGAAGCAAGCTCCAGATCTCATCAAATACTCAGGATGgt--ttgtgctcatatcaagctaaattgttt----gcaacagactttttttgtaaaaaaaaaaccgg-ttcttaacctgctttgttaa-ctgtag

upper sequence: GLYMA16G24250.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G338928_T01 (Zea mays), 5'ss of exon 6
CTCAAAGGCAGATAGGGGAGACTGCCCTGAATGAAGTGAGCTCCAGATCTCATCAGATTCTCAGACTGgtacttatgttcctatttttgtaattttgtccaagggaagagaactttacagcacctcatcgctaagattcctaaataatgtgattcttcttcag
||||||| ||||| ||||| |||||| |||| |||   ||||||||||| |||||||| ||| |||||||  |    |    |||  || |||  ||| |||  |        ||   || |  |  |   |    |||  ||| ||   | |     | |||
CTCAAAGACAGATTGGGGAAACTGCCATGAACGAAACAAGCTCCAGATCGCATCAGATACTCCGACTGgttgtcccttgtgcattactg-aatgatgtgcaaatgt------tttagtaggaattagttttttg--ttctaaaagaacacgttcaagttgcag

upper sequence: GLYMA16G24250.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 5'ss of exon 6
CTCAAAGGCAGATAGGGGAGACTGCCCTGAATGAAGTGAGCTCCAGATCTCATCAGATTCTCAGACTGgtacttatgttcctatttttgtaattttgtccaagggaagagaactttaca-gcacctcatcgctaagattcctaaataatgtgattcttcttcag
| || || || ||||||||||| || || ||||||   ||||| ||||||||||| |||||||||||||||      |  ||||     | |||  |    |   |   ||| || | | |||    ||| |      || ||  ||||   | | |||| |||
CCCAGAGACAAATAGGGGAGACCGCACTTAATGAAACAAGCTCTAGATCTCATCAAATTCTCAGACTGgta------tgactatgaccttcatt--gattgacatagctgaatttcagatgcaagatatctcc-----tcttacttaattgtagttttctacag