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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAGGCAATGGCGAAGTGGAGATTGGATGTGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAGgtcattctctcattcatatgattttctatgtttagggcaagcaaatttaaatcccttaaagtgaagacatatgcccatttttaacttattatgaagccatcacaccacacgtttacattttctgttgcacgcttcactgataaaccaatgcctcatcatttgcag

Basic information

species Glycine max
transcript GLYMA16G23920.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23920.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g03280.t01 (Vitis vinifera), 5'ss of exon 6
AGCAAGGCAATGGCGAAGTGGAGATTGGATGTGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAGgtcattctctcattcatatgattttctatgtttagggcaagcaaatttaaatcccttaaagtgaagacatatgcccatttttaacttattatgaagccatcacaccacacgtttacattttctgttgcacgcttcactgataaaccaatgcctcatcatttgcag
||||| |||||||||   ||| || ||||||||| ||||||||||||||||||||| ||| ||  ||   ||||| || |||| | |   | ||| |    |  |||  |  |       |    |||||||      | || |   |  |||| |   ||| ||||  |  || |   ||     ||                                                          
AGCAAAGCAATGGCGTGATGGGGACTGGATGTGCACAAATTGCAACAATCATAATTTTGCATCTCGATCCCAGTGCAATAGgttagtacttgatttaatgcagattcagttgtatttatgactttatttaaa------agagagtctatttatgtc--atttaaactcttggtgtatggatattttcaa---------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193655798|gb|FK601456.1|FK601456
EST:     TGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAG                         GTGCAAAACTCAAAGAATGGCTCCCATGCAACCTGTTAATGTTGTGTAATG
genomic: TGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAGgtcattctct ... tcatttgcagGTGCAAAACTCAAAGAATGGCTCCCATGCAACCTGTTAATGTTGTGTAATG
EST: gi|14999956|gb|BI320770.1|BI320770
EST:     TGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAG                         GTGCAAAACTCAAAGAATGGCTCCCATGCAACCTGTTAATGTTGTGTAATG
genomic: TGCTCAAATTGCAACAATCATAATTATGCTTCAAGACTACAGTGTAACAGgtcattctct ... tcatttgcagGTGCAAAACTCAAAGAATGGCTCCCATGCAACCTGTTAATGTTGTGTAATG