1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGTATAAGGGAGTCTCTCCTGAAGGAAAGAAACACAAGATCATCTCAAACTGAGATTCTCGGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAGgtatgaactaggagaaaaaattatattaatattagtaatgcttcaatttaaataatagacttaggatcaaaaccataagcaattaccatcataaaatgca...
species | Glycine max |
transcript | GLYMA16G23420.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGAGATTCTCGGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAG ATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCGGAAEST: gi|4292616|gb|AI441930.1|AI441930
genomic: CTGAGATTCTCGGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAGgtatgaacta ... ataaaaacagATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCGGAA
EST: CTGAGATTCTCGGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAG ATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCGGAAEST: gi|10710123|gb|BF009847.1|BF009847
genomic: CTGAGATTCTCGGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAGgtatgaacta ... ataaaaacagATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCGGAA
EST: CTGAGATTCTCGGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAG ATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCAGAA
genomic: CTGAGATTCTCGGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAGgtatgaacta ... ataaaaacagATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTATAAGGGAGTCTCTCCTGAAGGAAAGAAACACAAGATCATCTCAAACTGAGATTCTCGGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAGgtatgaactaggagaaaaaattatattaatattagtaatgcttcaatttaaataatagacttaggatcaaaaccataagcaattaccatcataaaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaaa