Sequence
atgc intronic sequence ATGC exonic sequenceTGATGATGAAAGTGGGCTTGTTTTTGCTTTTGATGGAAAACTGAAGCTGGGGATTTTGCCTGCAAGTATCTTCTGTAGTGGACATACATATTTCGTCCAGgtaggatttattcaattgacaattctaaactgtttgaaatacttttgtcttctgattttttatgtgctatacctttttttttctttcatgcaataaacaatctggagaaatcttgatcagattagagaaattgtgtacctgtttgatgtaagaatgtttatttatatattatgattgtag
Basic information
species | Glycine max |
transcript | GLYMA16G20730.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G20730.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g38930.1 (Oryza sativa), 5'ss of exon 2
TGATGATGAAAGTGGGCTTGTTTTTGCTTTTGATGGAAAACTGAAGCTGGGGATTTTGCCTGCAAGTATCTTCTGTAGTGGACATACATATTTCGTCCAGgtagga---tttattcaattgacaattctaaactgtttgaaatacttttgtcttctgattttttatgtgctatacctttttttttctttcatgcaataaacaatctggagaaatcttgatcagattagagaaattgtgtacctgtttgatgtaagaatgtttatttatatattatgattgtag
|| || ||| || ||||| | | ||| |||||| ||||||||||| || | | || |||||||| ||||||||||| ||||||||||| || ||||||| ||||| |||| | | ||| | ||||| || || | ||||| | || | |||| | ||||| || | |
TGTTGGAGAAGATGAACTTGTATATTCTTATGATGGGAAACTGAAGCTTGGAGTCCTACCAGCAAGTATATTCTGTAGTGGTCATACATATTTTGTGCAGgtagttgctcttatttgtttgaaattggcaaatt-----aaatatcttgcatgtcaaaatttttctttggtgagtaaattttcagttagttagcaattg-catttt-----------------------------------------------------------------------------
upper sequence: GLYMA16G20730.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 6
TGATGATGAAAGTGGGCTTGTTTTTGCTTTTGATGGAAAACTGAAGCTGGGGATTTTGCCTGCAAGTATCTTCTGTAGTGGACATACATATTTCGTCCAGgtaggatttattcaattgacaattctaaactgtttgaaatacttttgtcttctgattttttatgtgctatacctttttttttctttcatgcaataaacaatctggagaaatcttgatcagattagagaaattgtgtacctgtttgatgtaagaatgtttatttatatattatgattgtag
||| || || ||||| || | | ||||| ||||||||| || |||||||| ||||||| || ||||| ||||||||||| ||||| ||||| || ||||| || | | | | | || || | | | || | | ||| || ||| ||| ||| ||| | | | || | || |||
TGACGAGGACAGTGGACTCGCATATGCTTATGATGGAAATCTCAAGCTGGGACTTTTGCCAGCTAGTATATTCTGTAGTGGGCATACTTATTTTGTGCAGgttgg-tcaaatagactagtgctttgaagttttgaaatttattaatcatccctggttctttttgt---atatatttgaaactttcagctccattcctcattctt----------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298185080|gb|HO030293.1|HO030293EST: GGATTTTGCCTGCAAGTATCTTCTGTAGTGGACATACATATTTCGTCCAG GCTATGTACCAGCAACTAAGGTTGGAGCCATATGCAGTGCACACAA
genomic: GGATTTTGCCTGCAAGTATCTTCTGTAGTGGACATACATATTTCGTCCAGgtaggattta ... atgattgtagGCTATGTACCAGCAACTAAGGTTGGAGCCATATGCAGTGCACACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGATGAAAGTGGGCTTGTTTTTGCTTTTGATGGAAAACTGAAGCTGGGGATTTTGCCTGCAAGTATCTTCTGTAGTGGACATACATATTTCGTCCAGgtaggatttattcaattgacaattctaaactgtttgaaatacttttgtcttctgattttttatgtgctatacctttttttttctttcatgcaataaacaatctggagaaatcttgatcagattagagaaattgtgtacctgtttgatgtaagaatgtttatttatatattatgattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA