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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGTATTTCCGCAAGGACCCTGTGAAATATGATGTTAAATATCAGgtacatattgaccttaaatttagcttctaagcataaaaaaatggagaagtggccaaatgagcaatgccccagaagtggacatctttttagagtaaattattctaaactaattgaacactcgtgtttgcag

Basic information

species Glycine max
transcript GLYMA16G19390.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19390.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G162672_T01 (Zea mays), 5'ss of exon 14
TTCAAGTATTTCCGCAAGGACCCTGTGAAATATGATGTTAAATATCAGgtacatattgaccttaaatttagcttctaagcataaaaaaatggagaagtggccaaatgagcaatgccccagaagtggacatctttttagagtaaattattctaaactaattgaacactcgtgtttgcag
||| |||| ||||  |||||||||||||| |||||||| |||||||||||     |   |      ||   || | |  |    |  | |   ||    ||      |||  | |||      |  |  ||||     |||   |  |||   | ||  ||                 
TTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAGgtgtgcttcagct---ggtt---ctcccactctcttactacttccgatccagct---ccagctcttccctttc--taaaggtcttag-gtagtgtttggttccggagta--tgg----------------