Sequence
atgc intronic sequence ATGC exonic sequenceACATCGAATGTATATCATCAATGCTGGTCCTGGATTTAAGAGGATGCTTTGGCCTGCAGCACAGAAGTTTCTTGATGCCAAAACTATTGCAAAGATACAGgtaaagggtataacttttggctggtagcatttcatataccttttccggaagtcctgctgatattacgtacttccctaaattttcag
Basic information
species | Glycine max |
transcript | GLYMA16G17830.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G17830.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G55690.3 (Arabidopsis thaliana), 5'ss of exon 8
ACATCGAATGTATATCATCAATGCTGGTCCTGGATTTAAGAGGATGCTTTGGCCTGCAGCACAGAAGTTTCTTGATGCCAAAACTATTGCAAAGATACAGgtaaagggtataacttttggctggtagcatttcatataccttttccggaagtcctgctgatattacgtacttccctaaattttcag
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GCACAGAATGTACATTGTAAATGCTGGAACAGGTTTCAAAAAGATGCTTTGGCCTGCTGCTCAGAAGTTTCTTGATGCAAAGACCATTGCAAAGATACACgtacag-------ctttcagcc--tagttttctatttgg--tcaactattgccatgtgtagttttcttatctctgtcaatg--cag
upper sequence: GLYMA16G17830.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G56160.1 (Arabidopsis thaliana), 5'ss of exon 7
ACATCGAATGTATATCATCAATGCTGGTCCTGGATTTAAGAGGATGCTTTGGCCTGCAGCACAGAAGTTTCTTGATGCCAAAACTATTGCAAAGATACAGgtaaagggtataacttttggctggtagcatttcatataccttttccggaagtcctgctgata-ttacgtacttccctaaattttcag
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GCACCGAATGTTCATTGTCAATGCAGGGATTGGATTCAGGAGTTTTCTTTGGCCTGCCGCACAGAAGCTTCTTGATCCGATGACTATTGCAAAGATACAAgtaatgactatcgctctggttt--tacttttaagtatatatcctc-gtttctgttattagcaaccactcattacttgtgttacttag
upper sequence: GLYMA16G17830.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 7
ACATCGAATGTATATCATCAATGCTGGTCCTGGATTTAAGAGGATGCTTTGGCCTGCAGCACAGAAGTTTCTTGATGCCAAAACTATTGCAAAGATACAGgtaaagggtataacttttggctgg-tagcatttcatataccttttccggaagtcctgctgatattacgtacttccctaaattttcag
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ACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATGCTTTGGCCTGCTGCACAAAAGTTCCTTGATCCAAAGACAATATCAAAGATACAGgtaaatgagttactttatgcctaaatatgattttgcat-ttttttattcagtattaactggctctatgttcatttggttaatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9566139|gb|BE475648.1|BE475648EST: GGCCTGCAGCACAGAAGTTTCTTGATGCCAAAACTATTGCAAAGATACAG GTTCTTGAACCTAAATCTTTATGTAAATTACTGGATATCATTGACTCTAG
genomic: GGCCTGCAGCACAGAAGTTTCTTGATGCCAAAACTATTGCAAAGATACAGgtaaagggta ... aaattttcagGTTCTTGAACCTAAATCTTTATGTAAATTACTGGATATCATTGACTCTAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACATCGAATGTATATCATCAATGCTGGTCCTGGATTTAAGAGGATGCTTTGGCCTGCAGCACAGAAGTTTCTTGATGCCAAAACTATTGCAAAGATACAGgtaaagggtataacttttggctggtagcatttcatataccttttccggaagtcctgctgatattacgtacttccctaaattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG