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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAATGATCCTGTATGGGTCATGAATGTAGTTTCATCTTATGCTACCAATACACTCCCTGTGGTTTTTGACCGTGGCCTTATTGGAACCTTCCATGACTGgtaatttgaaaatataggatatgaacataaggttgttttttaattatgaatatacttttttcttgtaagatctgatgttgatttgattttattatggtag

Basic information

species Glycine max
transcript GLYMA16G17500.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G17500.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 6
TTAATGATCCTGTATGGGTCATGAATGTAGTTTCATCTTATGCTACCAATACACTCCCTGTGGTTTTTGACCGTGGCCTTATTGGAACCTTCCATGACTGgtaatttg-aaaatataggatatgaacat-aaggttgttttttaattatgaatatacttttttcttgtaagatctgatgttgatttgattt-tattatggtag
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TTAATGATCCGTTGTGGGTCATGAATGTGGTCTCTTCCTACGCTGCTAACACACTTCCTGTGGTCTTTGACCGGGGTCTGATTGGGACCTATCATGACTGgtaattttcaaagcatttga-atacacatgaaagcttttgggtctgcattaaggcacacttcttgtgaactttgtttcatttgtttgtttcctgttcttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197995|gb|HO039534.1|HO039534
EST:     ACACTCCCTGTGGTTTTTGACCGTGGCCTTATTGGAACCTTCCATGACTG                         GTGTGAAGCTTTTTCAACATATCCTCGAACATATGGCCTGCTTCATCTTGA
genomic: ACACTCCCTGTGGTTTTTGACCGTGGCCTTATTGGAACCTTCCATGACTGgtaatttgaa ... attatggtagGTGTGAAGCTTTTTCAACATATCCTCGAACATATGACCTGCTTCATCTTGA
EST: gi|16105518|gb|BI893258.1|BI893258
EST:     ACACTCCCTGTGGTTTTTGACCGTGGCCTTATTGGAACCTTCCATGACTG                         GTGTGAAGCTTTTTCAACATATCCTCGAACATATGACCTGCTTCATCTTGA
genomic: ACACTCCCTGTGGTTTTTGACCGTGGCCTTATTGGAACCTTCCATGACTGgtaatttgaa ... attatggtagGTGTGAAGCTTTTTCAACATATCCTCGAACATATGACCTGCTTCATCTTGA
EST: gi|6667669|gb|AW279120.1|AW279120
EST:     TTATTGGAACCTTCCATGACTG                         GTGTGAAGCTTTTTCAACATATCCTCGAACATATGACCTGCTTCATCTTGA
genomic: TTATTGGAACCTTCCATGACTGgtaatttgaa ... attatggtagGTGTGAAGCTTTTTCAACATATCCTCGAACATATGACCTGCTTCATCTTGA