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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagacattgatgacttgacactttttttcttccttctgattggttttttctttcagtactaactgaaacttgtatttgcag

Basic information

species Glycine max
transcript GLYMA16G17150.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6070525|gb|AW099912.1|AW099912
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|9986447|gb|BE660555.1|BE660555
EST:     AGCTGTAATGGAAGAATTACTAGCANAAGGATTGGAAAAGGCTGGAAAAT                         GCTATTCTCTCTGGCTGT
genomic: AGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTG-AAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGT
EST: gi|6455064|gb|AW185747.1|AW185747
EST:     AGCTGTAATGGAAGAATTACTAGCAGAAAG-ATTGGAAAAAGCTGAAGAT                         GCTATTCTCTCTAGCTGTTCAGCTGGAAGACTGACTACAATATTACACTGT
genomic: AGCTGTAATGGAAGAATTACTAGCA-AAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|7590021|gb|AW705783.1|AW705783
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|9986449|gb|BE660557.1|BE660557
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGGTCAACTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|5770415|gb|AI973589.1|AI973589
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|192301230|gb|FG990180.1|FG990180
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|6455714|gb|AW186397.1|AW186397
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|6724652|gb|AW309107.1|AW309107
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|163921421|gb|EH038959.1|EH038959
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|151395749|gb|EV265626.1|EV265626
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|6341667|gb|AW164491.1|AW164491
EST:     CAGCTGTAATGCAAGAATTACTATCAAAAGGATTGGAAAATGCTGAAAAT                         GCTATTCTCTCTGGCTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGT
EST: gi|7589352|gb|AW705128.1|AW705128
EST:     CAGCTGTAATGGAAGAATTACTAGCCAAAGGATAGGAAACGGCTGAGAAT                         GCTACTCTCTCTGGCTGTGCACCTGGAGGACTGACTACAAT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAAT
EST: gi|9986448|gb|BE660556.1|BE660556
EST:     GCTGTNATGGAAGAATTACTAGCAAAAGGGATTGGAAAAGGCTTGAAAAT                         GCTATTCTCTCTGGCTGGTCAACTTGGAGGACTGACTACCATTATTACAC
genomic: GCTGTAATGGAAGAATTACTAGCAAAAGG-ATTGGAAAAGGCT-GAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCT-GGAGGACTGACTACAAT-ATTACAC
EST: gi|9986450|gb|BE660558.1|BE660558
EST:     AGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTTGAAAAT                         GCTATTCTCTCTGGCTGT-CAGCTGGAGGACTGACTACAATATTACACTG
genomic: AGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCT-GAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTG
EST: gi|6668142|gb|AW279593.1|AW279593
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|5753593|gb|AI960880.1|AI960880
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|7589195|gb|AW704974.1|AW704974
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|298163578|gb|HO012311.1|HO012311
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|6070716|gb|AW100103.1|AW100103
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAGAAT                         GCTATTCTCTCTG
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTG
EST: gi|9986445|gb|BE660553.1|BE660553
EST:     AGCTGTAATGGAAGAATTACTAGCAAAAAGGATTGGAAAANGCTGAAAAT                         GCTATTCTCTCTTGGCTGGTCAACTTGGAGGACTGACTACAATATTACACT
genomic: AGCTGTAATGGAAGAATTACTAGCAAAA-GGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCT-GGCTGTTCAGCT-GGAGGACTGACTACAATATTACACT
EST: gi|6341492|gb|AW164316.1|AW164316
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
EST: gi|6724637|gb|AW309092.1|AW309092
EST:     CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAAGCTGAAAAT                         GCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT
genomic: CAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagaca ... gtatttgcagGCTATTCTCTCTGGCTGTTCAGCTGGAGGACTGACTACAATATTACACTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTTTCAGCTGTAATGGAAGAATTACTAGCAAAAGGATTGGAAAAGGCTGAAAATgtacgagacattgatgacttgacactttttttcttccttctgattggttttttctttcagtactaactgaaacttgtatttgcag

- - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - -  GGAAGA