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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATGATTCTACTCATGGTCCATTCAAGGGGACCATTAAGATTTTGGATGACTCTACTTTGGAAATTAATGGGAAGCAGGTTAAAGTGGTGAGCAAAAGgtatcatgagttgagctcttataattaaaagggatgttatgtgtgtactagattacaaagtgttaaagagttctaaacaatagattaacatgcacacatttattttatgtattcag

Basic information

species Glycine max
transcript GLYMA16G09020.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G09020.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g45590.1 (Oryza sativa), 5'ss of exon 6
AATATGATTCTACTCATGGTCCATTCAAGGGGACCATTAAGATTTTGGATGACTCTACTTTGGAAATTAATGGGAAGCAGGTTAAAGTGGTGAGCAAAAGgt---atcatga--------------gttgagctc----ttataattaaaagggatgttatgtgtgtactagattacaaag-----tgttaaagagttctaaacaatag--attaacatgcacacatttatttta-tgtattcag----------------------------
| |||||||| || ||||||||||| || || ||||| ||| || ||||||| || || ||||| |||||||||||| |  ||  |||    ||||||||||   | |||||              |||||   |    || |  ||||||    |  | |     |||| || | |  |      ||||| | |||| |      ||   |||  |   |   | ||  ||||  |  | | |                             
AGTATGATTCGACACATGGTCCATTTAAAGGCACCATAAAGGTTGTGGATGAGTCAACCTTGGAGATTAATGGGAAGAAAATTTCAGTTACAAGCAAAAGgtaagaacatgaattcttcaggtctggttgaatccacggttttgtttaaaaattgtacttttgacatacttgactccttatattcttgttatatagttttgggttgtaataattctcccacgtgctttagttttgctaaaattatttgttggtgcttctcctttccatttcag

upper sequence: GLYMA16G09020.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 6
AATATGATTCTACTCATGGTCCATTCAAGGGGACCATTAAGATTTTGGATGACTCTACTTTGGAAATTAATGGGAAGCAGGTTAAAGTGGTGAGCAAAAGgtatcatgagttgagctcttat----aattaaaagggatgtt------atgtgtgtactaga--ttacaaagtgttaaagagttcta--aacaatagattaacatgcacacatttattttatgtattcag
| |||||||||||||||||    |||||||| ||||| ||| | |||||||| || ||||||||||| ||||| |||||| | |||||    ||||||||||||| | |  | || | ||       |||  |  || |||       ||   ||   |||   | ||| | |   | |  ||| ||   |  | | ||| ||||  | |  | | | | |||   ||||
AGTATGATTCTACTCATGGAGTTTTCAAGGGAACCATCAAGGTATTGGATGAGTCCACTTTGGAAATCAATGGCAAGCAGATAAAAGTTACAAGCAAAAGgtatcctaaccttagtttttgactgggattttagtggttgtagtagcaatacatgctttagtgctaacataataccacatggttttactgaagaaacattgacatcaaaatgtatgtat-atg---tcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254326010|gb|GR838891.1|GR838891
EST:     GACTCTACTTTGGAAATTAATGGGAAGCAGGTTAAAGTGGTGAGCAAAAG                         AGATCCTGCAGAGATCCCATGGAGTGATTTTGGGGCTGAATATGTCATTGA
genomic: GACTCTACTTTGGAAATTAATGGGAAGCAGGTTAAAGTGGTGAGCAAAAGgtatcatgag ... atgtattcagAGATCCTGCAGAGATCCCATGGAGTGATTTTGGGGCTGAATATGTCATTGA
EST: gi|254346561|gb|GR856283.1|GR856283
EST:     GACTCTACTTTGGAAATTAATGGGAAGCAGGTTAAAGTGGTGAGCAAAAG                         AGATCCTGCAGAGATCCCATGGAGTGATTTTGGGGCTGAATATGTCATTGA
genomic: GACTCTACTTTGGAAATTAATGGGAAGCAGGTTAAAGTGGTGAGCAAAAGgtatcatgag ... atgtattcagAGATCCTGCAGAGATCCCATGGAGTGATTTTGGGGCTGAATATGTCATTGA