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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCTCGAGCTAAATATGCTGTTGTCTCTGGAGCTCATCGGCGCGTTGGAACTACCTATGCTCAACTAATCGCTGCACTGGCTGCAACACGCAATCTGGgtacatgcatttcccccaccccttgtattatttgttgttacttgtttcttcaaacataccactgaagcatccaaaaactattttcttcag

Basic information

species Glycine max
transcript GLYMA16G05700.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05700.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 6
GCATCTCGAGCTAAATATGCTGTTGTCTCTGGAGCTCATCGGCGCGTTGGAACTACCTATGCTCAACTAATCGCTGCACTGGCTGCAACACGCAATCTGGgtacatgcatttcccccaccccttgtattatttgttgttacttgtttcttcaaacataccactgaagcatccaaaaactattttcttcag
||||| || || ||  |||||||||| ||||| |||||  |||| || |||||||||||||||||  || |||||||| | |||||| ||  ||| || ||||| |   |     |  |  || | ||   || |||| |     || || ||   | | | |      | ||                 
GCATCACGTGCAAAGCATGCTGTTGTTTCTGGGGCTCACAGGCGTGTGGGAACTACCTATGCTCAGTTAGTCGCTGCATTAGCTGCAGCAAACAAACTCGgtacttctctagtttctgcttctag-atccctttttgtgatgaagttttttaattttcctatttcttttttcag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10842891|gb|BF066252.1|BF066252
EST:     AACTACCTATGCTCAACTAATCGCTGCACTGGCTGCAACACGCAATCTGG                         GAGACAACTCGTCTAGTTCAAGTTTTTCATTTTTGAGCAGTTTCCAGAGTA
genomic: AACTACCTATGCTCAACTAATCGCTGCACTGGCTGCAACACGCAATCTGGgtacatgcat ... ttttcttcagGAGACAACTCGTCTAGTTCAAGTTTTTCATTTTTGAGCAGTTTCCAGAGTA