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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCTTTACCCGTGGTCTTCCCCTCCGTATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttacacaattgctagttttatgatagggttccatactttcatatatattgttttccttcagtattgacgttctaatgaaataaatttccccttcccag

Basic information

species Glycine max
transcript GLYMA16G05450.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05450.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g10810.1 (Oryza sativa), 5'ss of exon 5
GTCTCTTTACCCGTGGTCTTCCCCTCCGTATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagt------ttacacaattgctagttttatgatagggttccatactttcatatatattgttttccttcagtattgacgttctaatgaaataaatttccccttcccag
|||| || || ||||| || ||||| |||||||| ||||| || || ||||||||||| ||||||||||| |||||||||||||||||    || |||||||||||       |  |  ||| ||    |||  | || ||      |||||   |  ||   |    || || ||| || || ||||  || |                
GTCTATTCACTCGTGGACTGCCCCTACGTATTGTCATGATCGGTACCCTTACTGGAGCTCAATGGGGAATTTATGATGCATTCAAAGTCATGGTTGGATTgtaagtatctttctttattattactgtcattagaacagcgtcattatctttcgattgaatcagtaaa-ttgagaattcactttataatttaacag---------------

upper sequence: GLYMA16G05450.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g52860.1 (Oryza sativa), 5'ss of exon 5
GTCTCTTTACCCGTGGTCTTCCCCTCCGTATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttacacaattgctagttttatgatagggttccatactttcatatatattgttttccttcagtattgacgttctaatgaaataaatttccccttcccag
| || || ||  | || || ||||| ||||||||||||||||||||||||||||| || |||||||| || |||||||| || |||||    || ||| ||||||| | | |  ||||| | |   | ||    ||      |   | ||  |  |  ||  || || | | | |  || |||    |  ||     ||  |||
GCCTTTTCACTAGAGGACTGCCCCTTCGTATTGTTATGATTGGAACTCTTACTGGTGCTCAATGGGGTATTTATGATGCTTTTAAAGTCATGGTTGGACTgtaagtattc-cttttgcttgctaattaatttaatt----gttagaacattaaaaggctt--ttgaggaatcaaggacttatggcccat-ttatatattttcag

upper sequence: GLYMA16G05450.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G152827_T01 (Zea mays), 5'ss of exon 5
GTCTCTTTACCCGTGGTCTTCCCCTCCGTATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttacacaattgctagttttatgatagggttccatactttcatatatattgttttccttcagtattgacgttctaatgaaataaatttccccttcccag
||||||| ||  | || ||||| || ||||| || |||||||| || |||||||| || || |||||||| || |||||||||||||||   || ||| ||| ||| |       | ||   ||    |||     |   || | || ||   |       ||     | | |   | |  |    |   ||||   |||    
GTCTCTTCACTAGAGGACTTCCTCTTCGTATCGTCATGATTGGTACCCTTACTGGTGCTCAGTGGGGAATTTACGATGCATTCAAAGTGATGGTTGGACTgtgagtatctctctctactgccttaggaataaccaccgcaacatccaaatccttcagagagctcaccaactaattctttgtt----tcgttttctgtttcag--

upper sequence: GLYMA16G05450.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G015401_T01 (Zea mays), 5'ss of exon 5
GTCTCTTTACCCGTGGTCTTCCCCTCCGTATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttacacaattgctagttttatgatagggttccatactttcatatatattgttttccttcagtattgacgttctaatgaaataaatttcccct-tcccag
||||||| ||  | || ||||| || ||||| || |||||||| || |||||||| || || |||||||| || |||||||||||||||   || ||| ||| ||| |       | ||   ||    ||| |     |  |      | ||     |       ||   | ||   |||||    |   |     || |  |||
GTCTCTTCACTAGAGGACTTCCTCTTCGTATCGTCATGATTGGTACCCTTACTGGTGCTCAGTGGGGAATTTACGATGCATTCAAAGTGATGGTTGGACTgtgagtgtctctctctactgccttaggaataagtgaatagccaccgcaacatccaaatccttcagagagctcaccaactaattctttgtttcgtttctgtttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407494|gb|EV277309.1|EV277309
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCT
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCT
EST: gi|9439983|gb|BE440494.1|BE440494
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCNGATT                         GCCAACCACTGGTGGTCCTGCTGCTGCAGCTGCTCTAGCTTCTGATGCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA
EST: gi|192324693|gb|FK018759.1|FK018759
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA
EST: gi|19938613|gb|BQ081803.1|BQ081803
EST:     ACTGGAGCCCAATGCGGAATATATGATGCATTCAAAGTGTCTGTCCGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA
EST: gi|14991171|gb|BI316844.1|BI316844
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA
EST: gi|10237660|gb|BE806548.1|BE806548
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATT                         GCCAACCCACTG-TGGTCCTGCTCCTGCAGCTGCTCTAACTTCTGATGCTG
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttac ... cccttcccagGCCAACC-ACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTG
EST: gi|21888708|gb|BQ741921.1|BQ741921
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAG
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAG
EST: gi|13481245|gb|BG510588.1|BG510588
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA
EST: gi|22526003|gb|BU084814.1|BU084814
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA
EST: gi|23728600|gb|BU762362.1|BU762362
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTGTCTGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCTAGCTTCTGATGCTGA