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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGTGGCATTGGAATTGATCGAACAGCTGACTACTTTGTGATGGAGAAAGTGGACATGCTTATTGGACGCTTTTGGGCATATCTATTGAGAGTAACTAGgtaagcaaactcagtctggaaaatttagtacttgatgctaatgaataatccattatgagaagtcatgatattgattaatatattaacttgtctcagcaag...

Basic information

species Glycine max
transcript GLYMA16G05180.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G011136_T01 (Zea mays), 5'ss of exon 6
GGCGTGGCATTGGAATTGATCGAACAGCTGACTACTTTGTGATGGAGAAAGTGGACATGCTTATTGGACGCTTTTGGGCATATCTATTGAGAGTAACTAGgtaagcaaactcagtctggaaaa---tttagtacttgatgctaatgaataatccattatgagaagtcatgatattgattaatat--attaa--cttgtctcagcaag--
| || ||||||||||||||||||||| ||||||||||| | || |||||||| ||  |  | ||    ||   ||||   |   |  | || || || |||||     ||||  |      ||   |||  |  ||||  | ||||  || |||| |||   ||   ||  ||| |  | |||   || ||  ||| | |   | |   
GTCGGGGCATTGGAATTGATCGAACAACTGACTACTTTTTCATTGAGAAAGTAGATGTAATGATATCCCGAGCTTGGAGGTCATTGCTCAGGGTTACCAGgtatctgcactcttttgcagcaaccttttgttttttgaacccaatg--tactccagtatacaaaaatattgtatggtgttataccaatgaattcttatttttactacag

upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G527387_T01 (Zea mays), 5'ss of exon 6
GGCGTGGCATTGGAATTGATCGAACAGCTGACTACTTTGTGATGGAGAAAGTGGACATGCTTATTGGACGCTTTTGGGCATATCTATTGAGAGTAACTAGgta-agcaaactcagtctggaaaatttagtacttgatgctaatgaataatccattatgagaagtcatgatattgatt----aatatattaacttgtctcagcaag
| || |||||||| |||||||| ||| ||||||||||  | ||||||||||||||  |  | ||    ||    |||   |   |  |  |||| || ||||| | ||  || |   |   ||  ||  | |   ||    ||  |||  |  || | | | ||  ||   | ||||    |  | |  ||   | || |   | 
GTCGGGGCATTGGGATTGATCGGACAACTGACTACTTCTTCATGGAGAAAGTGGATGTCATCATATCCCGAGCATGGAGGTCATTGCTTCGAGTCACAAGgtataacacgctga---tatcaatcttctttcactatcaggatcgatagactgttctca-aggtggtgccctcgattttggaggacacaaagaagactgatgga-

upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 6
GGCGTGGCATTGGAATTGATCGAACAGCTGACTACTTTGTGATGGAGAAAGTGGACATGCTTATTGGACGCTTTTGGGCATATCTATTGAGAGTAACTAGgtaagcaaac-tcagtctggaaaatttagtacttgatgctaatgaataatccattatgagaagtcatgatattgattaatatattaacttg--tctcagcaag
| || ||||||||||| ||||||||| |||| |||||| | |||||||||||||||||| | |||  |||  | |||  |   || |||| | | |||||| ||| ||   |||  ||  | || || | | | | |  |   | |||    ||   ||  | | | ||  ||  |   ||   ||  ||   | | |    |
GACGCGGCATTGGAATAGATCGAACATCTGATTACTTTTTCATGGAGAAAGTGGACATGATCATTTCACGTCTATGGTTAATGCTTTTGAAATTGACTAGgcaagtaattatcatgcttcataacttggaaat-gtttttttaggata--ttatggagatgaattaagaacttagtatttagcatagtttaaatattaatctg