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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATCTCGCAACGGAAAACAGAGTTAATAGGAGAAAATGAAAAGCCTTCATGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAGgttgtgtatatctgtcatgttattatgttactttggaatttaaaggggaagaaaaatccttttcttctctttttgtccccaaaatatgtttttcagtcat...

Basic information

species Glycine max
transcript GLYMA16G05140.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295469|gb|FG987083.1|FG987083
EST:     TGGACAAGGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAG                         AGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
genomic: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAGgttgtgtata ... ctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
EST: gi|26058540|gb|CA801454.1|CA801454
EST:     TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAG                         AGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
genomic: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAGgttgtgtata ... ctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
EST: gi|11413772|gb|BF425783.1|BF425783
EST:     TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAG                         AGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
genomic: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAGgttgtgtata ... ctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
EST: gi|19934822|gb|BQ079852.1|BQ079852
EST:     TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCA-                         AGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
genomic: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAGgttgtgtata ... ctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
EST: gi|23056166|gb|BU577706.1|BU577706
EST:     TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAG                         AGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA
genomic: TGGACAAAGCGATTATTGCTTAATGATAAGTTGCTATGCTCTAAAATCAGgttgtgtata ... ctacctgcagAGAAGAGGCAAACGAGTTGTGTCAAACTCTAGAGAACAATGAGGACGAGAA