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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTCTCTTCTGATCCTGATCTTAGATGCCAACAGgttcttattatgctctgaatttttctcttcacatgtattttatttttcccgagacaaaacatgttgattaaaaacacttcccccctttttgtttatttttttttaacag

Basic information

species Glycine max
transcript GLYMA16G04300.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04300.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G03790.3 (Arabidopsis thaliana), 5'ss of exon 7
GGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTCTCTTCTGATCCTGATCTTAGATGCCAACAGgttcttattatgctctgaatttttctcttcacatgtattttatttttcccgagacaaaacatgttgattaaaaacacttcccccctttttgtttatttttttttaacag
|  | | |||||||| ||||||||||||||| |||||||  |||| ||||||||||| ||||||||||| || |||||  |  ||||||||||||||||||||   |||   |  |   ||||| |||| | |   |   |||   ||   |       |||  | || |  || | ||      |  |  ||  |             
GACTGCAATAGCTGCGGGAATGGTACACAGCTTGGCTCTAGCAGAAGATGGTGCATTCTTTTATTGGGTTTCCTCTGACTCCAATCTTAGATGCCAACAGgttgg-attcaaccttctttttttatcttaaaaa--aacatataactcaatatgtctcgcatagtaataaccaaaatttggttaatcctgattcctgcag---------

upper sequence: GLYMA16G04300.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0032g00280.t01 (Vitis vinifera), 5'ss of exon 8
GGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTCTCTTCTGATCCTGATCTTAGATGCCAACAGgttcttattatgctctgaatttttctcttcacatgtattttatttttcccgagacaaaacatgttgattaaaaacacttcccccctttttgtttatttttttttaacag--
|||||| |||||||| || ||||| || ||||||||||||||||| ||||| ||  ||||||||||||| || || ||||||||||| |||||||| |||||| |  ||  |   |||| ||       |   || ||||   |||  || |    ||||| |||  |||       |  |  |   ||||  | || |  ||| |     
GGTTTCCATAGCTGCAGGGATGGTCCATAGCATGGCTCTTACAGAAGATGGCGCGATATTTTATTGGGTTTCATCCGATCCTGATCTAAGATGCCAGCAGgttttgcttgag---tgaacttggtgtgccttttgaatttccatttgtcccaagtgaaacaggtttcttagttttcatctctgctcctttgcctcttctggttttatgtag