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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTTGGATGATGAGATCAAGTCATGGCTAGCTTTTGCTGCCCAAAAAATTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataatctgattatatatctgtttccttaaaacaatgcaacatgctatttattggggccaaatataactacacacaactagaaggttttcattaaa...

Basic information

species Glycine max
transcript GLYMA16G04240.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8670420|gb|BE191527.1|BE191527
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|8669740|gb|BE190847.1|BE190847
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|16105053|gb|BI892793.1|BI892793
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|22522024|gb|BU080835.1|BU080835
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|23728244|gb|BU762169.1|BU762169
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|22521984|gb|BU080795.1|BU080795
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|9564613|gb|BE474122.1|BE474122
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|193676152|gb|FK620082.1|FK620082
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|213603185|gb|DB981039.1|DB981039
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|192333042|gb|FK024691.1|FK024691
EST:     GCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: GCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|192333296|gb|FK026177.1|FK026177
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|213615221|gb|DB965029.1|DB965029
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|12689966|gb|BG156302.1|BG156302
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|7640038|gb|AW734347.1|AW734347
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|209727264|gb|BW663210.1|BW663210
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGATGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|9204537|gb|BE330761.1|BE330761
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|15286256|gb|BI470147.1|BI470147
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTTTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|10846169|gb|BF069133.1|BF069133
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|9259682|gb|BE347829.1|BE347829
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|15286907|gb|BI470798.1|BI470798
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|26048073|gb|CA784670.1|CA784670
EST:     AACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: AACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|7588477|gb|AW704334.1|AW704334
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|13252819|gb|BG363722.1|BG363722
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|6502045|gb|AW203418.1|AW203418
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|6454893|gb|AW185503.1|AW185503
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTTGCCACAAGGATGAT                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAAG-CTTCTCC
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAA-GTCTTCTCC
EST: gi|20815113|gb|BQ299591.1|BQ299591
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|26057207|gb|CA800121.1|CA800121
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
EST: gi|13477481|gb|BG507350.1|BG507350
EST:     TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAG                         GCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA
genomic: TTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataat ... tcattctcagGCCTTCTTCTCTGGTAATGCTGCTGCTCTGGCTTCAAGGAAGTCTTCTCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGTTGGATGATGAGATCAAGTCATGGCTAGCTTTTGCTGCCCAAAAAATTGTTGAAGTTAACGCATTGGCTAAAGCATTGTCTGGCCACAAGGATGAGgtaatataatctgattatatatctgtttccttaaaacaatgcaacatgctatttattggggccaaatataactacacacaactagaaggttttcattaaa

- - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG