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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTTGCTCTTCGATGTGTTGACCCTGATGCGGCAAAGAGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttcttctcccttctcaaactttacattttagttgactgaaccaataataagaaagttcaattttttgttgtaatctgatgcttatatcttttctttcatccttcttgtctgtag

Basic information

species Glycine max
transcript GLYMA16G03650.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G03650.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g03410.1 (Oryza sativa), 5'ss of exon 6
GTTGGTTGCTCTTCGATGTGTTGACCCTGATGCGGCAAAGAGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttcttctcccttctcaaactttacattttagttgactgaaccaataata-agaaagttcaattttttgttgtaatctgatgcttatatcttttctttcatccttcttgtctgtag
  |||| || ||||| || || || |||||||     |||||||||||||| |||||||| || |||||||||||    || || ||  ||| ||| ||||| |||||| ||| ||| |  ||||||    |||  |  | | |   || | || ||  |  ||| ||| |  ||| ||| || |  | |||                            
TCTGGTCGCCCTTCGCTGCGTCGATCCTGATGGCCACAAGAGGCCTAAAATGGGACATGTAATTCACATGCTCGAAATGGATGATCTACTATGCCGCGATgtatgttctactcacttat-gaactttttgatttcttccatttactaaacagtatagttaactcattttctgattgcaat-tgttcatcatacag-------------------------

upper sequence: GLYMA16G03650.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G176604_T01 (Zea mays), 5'ss of exon 3
GTTGGTTGCTCTTCGATGTGTTGACCCTGATGCGGCAAAGAGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttcttctcccttctcaaactttacattttagttgactgaaccaataataagaaagttcaattttttgttgtaatctgatgcttatatcttttctttcatccttcttgtctgtag
  |||| || ||||| ||||| ||||||||||||   |||||||||||||| || |||||||| ||||||||||||   || || ||| | ||||| ||||| |||      |  |   ||   |||   |  |   |        || |   |   |    | |    | ||   ||||  ||    |  | | ||  |  ||  |            
CCTGGTCGCGCTTCGCTGTGTCGACCCTGATGCGAACAAGAGGCCTAAAATGGGGCATGTGATTCACATGCTCGAGATGGACGATCTCCTCTTCCGAGATgtatgtcagaaccattaaccatcatttgtttcctcccttctc---tcagtctcatcta---ccgagccgtagtaacaatcacattgccaattatgttgatatatggtcag---------

upper sequence: GLYMA16G03650.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 6
GTTGGTTGCTCTTCGATGTGTTGACCCTGATGCGGCAAAGAGGCCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtg----------ttcttctcccttctcaaactttacattttagttgactgaaccaataataagaaagttcaattttttgttgtaatctgatgcttatatcttttctttc-atccttcttgtctgtag--------------
 || |||||||| || |||||||| ||||||||  |||||||||| ||||| |||||||| ||||||||||| ||||| || |||||  ||||||| |||||  |          ||| |    |||||  || | || |  |||| |     ||   ||   || |||   ||| |  | ||||  ||       ||||  |||   |||| | ||   |||| ||| |              
TTTAGTTGCTCTCCGGTGTGTTGATCCTGATGCAACAAAGAGGCCCAAAATGGGACATGTAATCCACATGCTTGAGGCCGATGACCTACTATTCCGAGATgtacgcatcatttgtttcattcatcttcttcaattataaaagttagatagtccaa--gatgtcaaaaaatgacaaatgatagttg--atgaatcaattattgcttgaatttccaacccatttgtttgttgtcattattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31459211|gb|CD401239.1|CD401239
EST:     TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGAT                         GATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
genomic: TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttctt ... ttgtctgtagGATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
EST: gi|31475026|gb|CD417054.1|CD417054
EST:     TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGAT                         GATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
genomic: TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttctt ... ttgtctgtagGATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
EST: gi|298178136|gb|HO027519.1|HO027519
EST:     TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGAT                         GATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
genomic: TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttctt ... ttgtctgtagGATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
EST: gi|6747050|gb|AW317506.1|AW317506
EST:     TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGAT                         GATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
genomic: TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttctt ... ttgtctgtagGATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
EST: gi|31472400|gb|CD414428.1|CD414428
EST:     TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGAT                         GATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
genomic: TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttctt ... ttgtctgtagGATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
EST: gi|254335324|gb|GR846821.1|GR846821
EST:     TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGAT                         GATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
genomic: TAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttctt ... ttgtctgtagGATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
EST: gi|31305530|gb|CD390733.1|CD390733
EST:     CATGCTCGAGGCTGAGGACCTCTTATTCCGTGAT                         GATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA
genomic: CATGCTCGAGGCTGAGGACCTCTTATTCCGTGATgtgtgttctt ... ttgtctgtagGATCGAAGGAGTGGAGGAGAATCTTCCCGTTCCCATCGCGATTATCAACTA