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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTGACTCCATGGGTTGTGGTATATCAAGTTGTCATGTAGTTAACGGAGTCCCTGCCCCAGGAAACTTTCACCCCATTCGGATGAATTCTGGGAATGAgtgagaactttctcaactacacataattcctttatgttactcatatagaggtcaatattacaattaagattgtttacatgtctagctttttaagttgtct...

Basic information

species Glycine max
transcript GLYMA16G02860.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G02860.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 6
ATATTGACTCCATGGGTTGTGGTATATCAAGTTGTCATGTAGTTAACGGAGTCCCTGCCCCAGGAAACTTTCACCCCATTCGGATGAATTCTGGGAATGAgtgagaac-tttctcaactacacataattcctttatgttactcatatagaggtcaatattacaattaagattgtttac-atgtctagctttttaagttgtct
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ATATTGATTCCATGGGTTGTGGAATATCCAGCTGTCATGTTGTAAATGGAGTCCCTGCACCAGGCAATTTCCACCCTATGCGGATGAATTCCGGAAATGAgtaagaaaattttccatcttgaccttagggtatgttaataagtgc-tccagttttttgccctaaccattgtgttataagataactagtggtgcatagagag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996561|gb|BM085933.1|BM085933
EST:     GTCCCTGCCCCAGGAAACTTTCACCCCATTCGGATGAATTCTGGGAATGA                         TATGGTGGTGGACCACAGTGCTCCTGATATGGCTCCTGTTATTCCACCAAA
genomic: GTCCCTGCCCCAGGAAACTTTCACCCCATTCGGATGAATTCTGGGAATGAgtgagaactt ... cttgttgaagTATGGTGGTGGACCACAGTGCTCCCGATATGGCTCCTGTTATTCCACCAAA
EST: gi|7692308|gb|AW760418.1|AW760418
EST:     GTCCCTGCCCCAGGAAACTTTCACCCCATTCGGATGAATTCTGGGAATGA                         TATGGTGGTGGACCACAGTGCTCCCGATATGGCTCCTGTTATTCCACCAA
genomic: GTCCCTGCCCCAGGAAACTTTCACCCCATTCGGATGAATTCTGGGAATGAgtgagaactt ... cttgttgaagTATGGTGGTGGACCACAGTGCTCCCGATATGGCTCCTGTTATTCCACCAA
EST: gi|9204434|gb|BE330658.1|BE330658
EST:     GTCCCTGCCCCAGGAAACTTTCACCCCATTCGGATGAATTCTGGGAATGA                         TATGGTGGTGGACCACAGTGCTCCCGATATGGCTCCTGTTATTCCACCAAA
genomic: GTCCCTGCCCCAGGAAACTTTCACCCCATTCGGATGAATTCTGGGAATGAgtgagaactt ... cttgttgaagTATGGTGGTGGACCACAGTGCTCCCGATATGGCTCCTGTTATTCCACCAAA