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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGAAATACCTGATGCTAACCAATTAGCCATTGAGTTTAGTAATCGTCGTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagttactacttgtaatgaaatttttatacaattcttgcatgtattgcttctcttctcatgttacttattttcag

Basic information

species Glycine max
transcript GLYMA16G01980.4
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9259477|gb|BE347624.1|BE347624
EST:     GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTGTCTGAAGAG                         GGGAGACTGGCCTTTCACGCTCTGTTCTCCAGAGAGGTGTTGGCTCAGAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|21600769|gb|BQ611100.1|BQ611100
EST:     GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|13788755|gb|BG651346.1|BG651346
EST:     GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|192326124|gb|FK016951.1|FK016951
EST:     GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|193450987|gb|FK416607.1|FK416607
EST:     CCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: CCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|298175447|gb|HO015080.1|HO015080
EST:     GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|151397316|gb|EV267189.1|EV267189
EST:     GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|6964160|gb|AW432853.1|AW432853
EST:     GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|21677782|gb|BQ630133.1|BQ630133
EST:     TTATAATCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|207797457|gb|GD769029.1|GD769029
EST:     GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|9205396|gb|BE331620.1|BE331620
EST:     GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|31468417|gb|CD410445.1|CD410445
EST:     GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|9259840|gb|BE347987.1|BE347987
EST:     GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCANAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|209701143|gb|BW664218.1|BW664218
EST:     GAGGTTTCTGAAGAG                         GGGAGACTGGCCTTACAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: GAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|11687317|gb|BF594957.1|BF594957
EST:     GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCANAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
EST: gi|10253169|gb|BE820935.1|BE820935
EST:     GTAGAAGCGTTAGCNNNCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAG                         GGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC
genomic: GTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagt ... ttattttcagGGGAGACTGGCCTTTCAGGCTCTGTTCTCCAGAGAGGTGTTGCCTCAAAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTGAAATACCTGATGCTAACCAATTAGCCATTGAGTTTAGTAATCGTCGTAGAAGCGTTAGCAACCTTACTGATTCTTGGAAAGAGGTTTCTGAAGAGgtatcccagttactacttgtaatgaaatttttatacaattcttgcatgtattgcttctcttctcatgttacttattttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA