1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATTGATCCAAGTGTAACCATGATGACGGTTGAAGAGAAGCCAGATGTGACATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAAgtaagtcattgaaatttcacttatcttacattataatgataatgaagttatgcggcactaaatttgtcatttccctgcaag
species | Glycine max |
transcript | GLYMA16G01810.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAA GTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGGATTEST: gi|16281984|gb|BI944774.1|BI944774
genomic: GCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAAgtaagtcatt ... tccctgcaagGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGGATT
EST: CATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAA GTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGGATTEST: gi|192297093|gb|FG988189.1|FG988189
genomic: CATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAAgtaagtcatt ... tccctgcaagGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGGATT
EST: CATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAA GTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGGATTEST: gi|208172296|gb|GD968913.1|GD968913
genomic: CATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAAgtaagtcatt ... tccctgcaagGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGGATT
EST: CATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAA GTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGGATTEST: gi|24205597|gb|BU964850.1|BU964850
genomic: CATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAAgtaagtcatt ... tccctgcaagGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGGATT
EST: CATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAA GTTGTTGAACTTCCCATGEST: gi|254319386|gb|GR829006.1|GR829006
genomic: CATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAAgtaagtcatt ... tccctgcaagGTTGTTGAACTTCCCATG
EST: CATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAA GTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGGATT
genomic: CATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAAgtaagtcatt ... tccctgcaagGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGATCCAAGTGTAACCATGATGACGGTTGAAGAGAAGCCAGATGTGACATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAAgtaagtcattgaaatttcacttatcttacattataatgataatgaagttatgcggcactaaatttgtcatttccctgcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG