Sequence
atgc intronic sequence ATGC exonic sequenceGTGGTTATGATAAGGAAGAAAAAGCAGCAAAGGCTTACGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTgtaaggttttctgaaacttgtacagttttctcctttgcaaaagtcttaccttagctcttagtcttgcaacagtagtattaaaatagaaacaattgaattg...
Basic information
species | Glycine max |
transcript | GLYMA16G00950.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G00950.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g07940.1 (Oryza sativa), 5'ss of exon 5
GTGGTTATGATAAGGAAGAAAAAGCAGCAAAGGCTTACGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTgtaaggttttctgaaacttgtacagttttctcctttgcaaaagtcttaccttagctcttagtcttgcaacagtagtattaaaatagaaacaattgaattg-----
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GTGGCTATGACAAGGAGGAGAAGGCTGCAAGGGCTTATGATTTGGCAGCACTCAAGTACTGGGGTCCAACAACTCACATAAATTTTCCAgtaagtacagttggataacacatcgcattcactcc-----attcctcttttcaattcaagacaatggaaataaaggatccagtaggggccggttcgtttcgttcc
upper sequence: GLYMA16G00950.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g01370.t01 (Vitis vinifera), 5'ss of exon 5
GTGGTTATGATAAGGAAGAAAAAGCAGCAAAGGCTTACGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTgtaaggttttctgaaacttgtacagttttctcctttgcaaaagtcttaccttagctcttagtcttgcaacagtagtattaaaatagaaacaattgaattg
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GTGGGTATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTAGCGGCACTCAAGTATTGGGGTCCAACCACTCACATAAATTTCCCTgtaagatatgtttgggtactcagaaaatgtttc------aagttccaatccgatattttaatagtatga-ggaaccactcacataaaactccatcag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7232559|gb|AW567914.1|AW567914EST: ACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCT TTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAA
genomic: ACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTgtaaggtttt ... aaatgctcagTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGTTATGATAAGGAAGAAAAAGCAGCAAAGGCTTACGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTgtaaggttttctgaaacttgtacagttttctcctttgcaaaagtcttaccttagctcttagtcttgcaacagtagtattaaaatagaaacaattgaattg
- - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatagaaa