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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGACTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactattctattatgatggcaatgatggatatgatgatgagatgcacatcattttaatccttttccttttaattttgcag

Basic information

species Glycine max
transcript GLYMA16G00360.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G00360.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 5'ss of exon 7
AATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGACTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactattctattatgatggcaatgatggatatga-tgatgagatgcacatcattttaat------ccttttccttttaattttgcag---------
|||||||||||||| || || ||||| ||||||||  ||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||  || ||   || |  |     | ||  | |  | |||  | |   |  |  | |  ||      |  ||| ||  |  || |  |          
AATCCTCTTGATCTGCTGCCCCCAAGTAAGATGATTCTGGATGAATGGAAGAGACTCTACTCAAATACCAAGACCAATTTCCGTGAGGTTGCAATTAAAGgtatctctctttctttttctttttttttataaaaaaaaatgacaaaagaaatctgttatggatgcaagcctcttttctcatgcttctataaatgataatc

upper sequence: GLYMA16G00360.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g01120.t01 (Vitis vinifera), 5'ss of exon 3
AATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGACTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat-----tctattatgatggcaatgatggatatgatgatgagatgcacatcattttaat------ccttttccttttaattttgcag-----
|||||||||||||| || || ||||| ||||||||  ||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||  || |     | | |  |        | ||  | |  ||||  | |   |  |  | |  ||      |  ||| ||  |  || |  |      
AATCCTCTTGATCTGCTGCCCCCAAGTAAGATGATTCTGGATGAATGGAAGAGACTCTACTCAAATACCAAGACCAATTTCCGTGAGGTTGCAATTAAAGgtatctctctctttctttttcttttctttttttataaaaaaaatgaaaaaagaaatctgttatggatgcaagcctcttttctcatgcttctataaatgat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205689|gb|BU964942.1|BU964942
EST:     GACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: GACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|151395544|gb|EV265421.1|EV265421
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGA
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGA
EST: gi|254314134|gb|GR831763.1|GR831763
EST:     CCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: CCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|208280396|gb|GE074546.1|GE074546
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|192332371|gb|FK026036.1|FK026036
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|254348583|gb|GR852262.1|GR852262
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|208330822|gb|GE131773.1|GE131773
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGG-ATATTCTCTGTGGT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGT
EST: gi|192295362|gb|FG986016.1|FG986016
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGATATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|208087298|gb|GD886464.1|GD886464
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGT
EST: gi|193539978|gb|FK496988.1|FK496988
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGGTT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|298166302|gb|HO009273.1|HO009273
EST:     TGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: TGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|192316481|gb|FK006772.1|FK006772
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|207832879|gb|GD801287.1|GD801287
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|254343640|gb|GR857396.1|GR857396
EST:     AGACTCTACTCAAACACCAAGACCAACTTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AGACTCTACTCAAACACCAAGACCAAC-TTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|192316480|gb|FK006771.1|FK006771
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         -ATTTTGGGACATGTACGATCCAGAGG-ATATTCTCTGTGGTTCTGTGAT-
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|7685661|gb|AW756309.1|AW756309
EST:     AAGACTCTACTCANACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCCAGAGG-ATATTCTCTGTGGTTCTGTGAT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCC-AGAGGGATATTCTCTGTGGTTCTGTGAT
EST: gi|208096426|gb|GD893799.1|GD893799
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGNTNTTCTCTGTGGT
genomic: A-GACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGT
EST: gi|208087985|gb|GD886087.1|GD886087
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGT
EST: gi|254348584|gb|GR852263.1|GR852263
EST:     AACACCAAGACCAACTTCCGCGAGG-TGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|192329460|gb|FK021858.1|FK021858
EST:     AAGACTCTACTCAA-CACCAAGAC-AACTTCCGCGAGGTTGCAATCAAAG                         -ATTTTGGGACATGTACGATCCAGAGG-ATATTCTCTGTGGT-CTGTGAT-
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|193334099|gb|FK297511.1|FK297511
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATAATTCTCTGTGGTT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGgtataactat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATA-TTCTCTGTGGTT