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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttggtgtcttaaatttttatttcagaagttttctgggataactttatacctaaagtgcaggaatttcatgatgggatgtctgtacctaatgcaa...

Basic information

species Glycine max
transcript GLYMA15G41690.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G41690.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g07760.2 (Oryza sativa), 5'ss of exon 5
GGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaact--tggtgtcttaaatttttatttcagaagttttctgggataactttatacctaaagtgcaggaatttcatgatgggat-gtctgtac-ctaatgcaa
 ||  | |||||||| |     ||||| || ||||| ||||||||||| ||||| |||||  || |||||||||||||  ||||||| ||| | ||||||||||  |  |      ||  |  ||||||    | | |       ||||||||| |||  ||   |   |    | || |   || |  | | | | | |    
TGCAAGTTTTATTGAATACTTTGCTGAAGAAGCAAAGCGTATATATGGTGATATTATTCCCCCAACTCTATCTGATCGTAGATTATTGGTTTTGAAGCAGgtaatatgctaaaacattgtaactttattaattatgctc---aaaataacttta-accccaatcacttaaccggcctgtttttattgcatattcaccagtttgt

upper sequence: GLYMA15G41690.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G128114_T03 (Zea mays), 5'ss of exon 5
GGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttggtgtcttaaatttttatttcagaagttttctgggataactttatacctaa--agtgcaggaatttcatg-atgggatgtctgtacctaatgcaa-
 ||  | || || || | |   || ||||| ||||| || |||||||| |||||||||||| || || ||||||||||  |||| || ||||| ||||||| ||   || ||   ||  ||||  || |     |  |   |  | ||| |||  |     | |  |  |  || ||| ||    ||| | |   || | ||  
TGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGCATATATGGTGATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGGTTCTGAAGCAGgcaa-tatgctga--taccttttccttactttgttgctgatgactcactctatttccgttcattttattagcttgatgtatattttgtttatga-tatttcatc

upper sequence: GLYMA15G41690.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 6
GGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttggtgtcttaaatttttatttcagaagttttctgggataactttatacctaaagtgcaggaatttcatgatgggatgtctgtacctaatgcaa--
||||| ||||||||||||  | || ||||||||||||||||||||||| |||||||||||  |||| ||| ||||||| ||  |  ||||| |||||||||| ||     || |||| || || |||  | |    || ||    || |   |  || ||          || ||  || |||  |   |  |||    |  
GGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagc-actggcttatatcttaattctatacaagttttgatgcaaataattgtcttaaacttttct-ctttatcttgagataccccaatttaacaagatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213596335|gb|DB960236.1|DB960236
EST:     ATATAATTCCTACACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAG                         CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
genomic: ATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttgg ... ggatttgcagCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
EST: gi|213614121|gb|DB964893.1|DB964893
EST:     ATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAG                         CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
genomic: ATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttgg ... ggatttgcagCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
EST: gi|209725352|gb|BW651520.1|BW651520
EST:     ATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAG                         CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
genomic: ATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttgg ... ggatttgcagCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
EST: gi|209708413|gb|BW665388.1|BW665388
EST:     ATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAG                         CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
genomic: ATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttgg ... ggatttgcagCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
EST: gi|15337286|gb|BI497942.1|BI497942
EST:     ATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAG                         CCTGTAGGGGTTGTANGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
genomic: ATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttgg ... ggatttgcagCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
EST: gi|298188148|gb|HO034841.1|HO034841
EST:     ATATAATTCCTGCACCTCTATCCGATCGGCGATTATTTGTTCTAAAGCAG                         CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
genomic: ATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttgg ... ggatttgcagCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
EST: gi|151395152|gb|EV265023.1|EV265023
EST:     ATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAG                         CCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG
genomic: ATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttgg ... ggatttgcagCCTGTAGGGGTTGTAGGTGCAATTACACCTTGGAACTTTCCCCTTGCTATG