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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGGgtatgcttcactatcttcggagtgcggttgcatatattaattattcttcaaacagcctgaatgtgaatttagttgttcctcaatgtttgttacacagtac...

Basic information

species Glycine max
transcript GLYMA15G37190.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G37190.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g59700.1 (Oryza sativa), 5'ss of exon 6
TTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGGgtatgcttcactatcttcggagtgcggttgcatatattaattattcttcaaacagcctgaatgtgaatttagt-tgttcctcaatgtttgttacaca-gtac-
||||||||||| ||||||||||| || ||||| ||||| |||||||| || ||||||||| | | |   || ||  || |||  |||         |  |   ||| |||||| || |  ||  |  ||| ||||  |  |  |       | |  ||  
TTCTTTATAACTTGTGCAAAATGTGAATGGCTGGACAACAAGCATGTGGTTTTTGGGgtaagttccctcatttt--gaatgct-ttgtgctctcggagcaacattccaacagcatgtacttgtctacagtatgtttttttacttacagagtaaatatatg

upper sequence: GLYMA15G37190.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G057329_T01 (Zea mays), 5'ss of exon 6
TTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGGgtatgcttcactatcttcggagtgcggttgcatatattaattattcttcaaacagcctgaatgtgaatttagt-tgttcctcaatgtttgttacac-agtac-
|||||||||||||||||||| || |||||||||||||| || ||||| || ||||||||| |||| |||   |||  | |||       | | | ||   | |||   | |   ||  | |      ||| |||   |  ||   |     |  ||    
TTCTTTATAACATGTGCAAAGTGTGACTGGCTTGACAACAAACATGTGGTATTTGGGgtaagctt-acttgattcaaa-tgcttccttttttgtgaacactccttaggataat-tggttttattgcaagtatgtatatgcatacctacagtattagggtt

upper sequence: GLYMA15G37190.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G38730.1 (Arabidopsis thaliana), 5'ss of exon 5
TTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGGgtatgcttcact--atcttcggagtgcggttgcatatattaattattcttcaaacagcctgaatgtgaatttagttg-ttcctcaatgtttgttacacagtac
||||| || || |||||||||||||| ||||||||||| ||||||||||||||||||||| | |    |  | ||    | |    ||    |||| |    |  |   |      |     | | |  | ||  ||| |     |||| |  ||||   
TTCTTCATCACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGgtacgttctctttaagctatttaattttcttatgcatatgaccggtaatagtattgatatatgactcattgcaatttcttcttttgattttgatgtacag---

upper sequence: GLYMA15G37190.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 5
TTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGGgtatgcttcactatcttcggagtgcggttgcatatattaattattcttcaaacagcctgaatgtgaatttagt-tgttcctca-atgtttgttacacagtac-
|||||||| |||||  | ||||| |||||||||||||| |||||||| || || |||||||| |     ||||   |    |   ||  |   ||    | ||||  || |  |||||    ||  || | |||   | | | |     |      |   
TTCTTTATCACATGCTCGAAATGTGACTGGCTTGACAACAAGCATGTGGTATTCGGGgtatgttctctaatctcttgccctc---tgggttctttgtaaagtctttcaatatgctgaaaccaaaaatattatgtcttttacaagaccaatgtctgttctt

upper sequence: GLYMA15G37190.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ31848 (Selaginella moellendorffii), 5'ss of exon 6
TTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGGgtatgcttcact-atcttcggagtgcggttgcatatattaattattcttcaaacagcctgaatgtgaatttagttgttcctcaatgtttgttacacagtac
||||||||||| || || |||||||||||||| ||||| |||||||| || ||||| ||| | |   || |   | |   |||     |  ||  |   | || | ||                                                  
TTCTTTATAACTTGCGCCAAATGCGACTGGCTCGACAACAAGCATGTGGTGTTTGGAgtaagttcttctcaaacttgagctgcaaa-actcatgctctattttttccag-------------------------------------------------

upper sequence: GLYMA15G37190.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ38013 (Selaginella moellendorffii), 5'ss of exon 6
TTCTTTATAACATGTGCAAAATGCGACTGGCTTGACAAAAAGCATGTTGTCTTTGGGgtatgcttcactatcttcggagtgcggttgcatatattaattattcttcaaacagcctgaatgtgaatttagttgttcctcaatgtttgttacacagtac
||||||||||| || || |||||||||||||| ||||| |||||||| || ||||| ||| | |   ||       |||        |  ||  |   | || | ||                                                  
TTCTTTATAACTTGCGCCAAATGCGACTGGCTCGACAACAAGCATGTGGTGTTTGGAgtaagttcttctcaaacttgagctacaaaactcatgctctattttttccag-------------------------------------------------