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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGATATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtgatgagaattttttgtccaagtctaaatttatgattaagggaaagcgttaagacatgagatagaatattaccaattttttgtcatgacatgata...

Basic information

species Glycine max
transcript GLYMA15G22050.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G22050.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G34880.1 (Arabidopsis thaliana), 5'ss of exon 6
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGATATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtgatgagaattttttgtccaagtctaaatttatgattaagggaaagcgttaagacatgagatagaatattaccaattttttgtcatgacatgata
||| ||||  || ||| |||||   | ||| |   |||| || ||||| ||||  ||||||||||| ||||| |||||||| |||||| | ||||| |||||||||    | |  |   | || ||    |  ||| | |||  |        ||   |  |   ||  ||   |   |  ||||  |  | |||     
CCGTCTGCAGGGATCTCTACTATCCTTTGAGGATTGTGAGATCTCAGGGGTTCAGGTGCCATGGCTCTATGTGGGCATGTGCTTTTCAACGTTTTGTTGGgtaagtttacatatatcactatctaa--tcatttttgtcattttgt-------ttcctatttctcatctaaatgtttgatgttttgattgtaacag----

upper sequence: GLYMA15G22050.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G30810.1 (Arabidopsis thaliana), 5'ss of exon 5
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGATATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtga--tgagaattttttgtccaagtctaaatttatgattaagggaaagcgttaagacatgagatagaatattaccaattttttgtcatgacatgata
 || || || || ||||||||   || |||||   |||| ||||| ||||||||||| |||||||| ||||| || |||||||||||||||||||| |||||||||    |   | | |||  |   | | ||||  | |  |        |  |||  ||  |  |||   |||||      | |||||| |||   |   
ACGGCTTCCTGGCTCTGTACTCTCTTTTGAAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCATCATTTTGTTGGgtaagtacactttcactctttgattttattataaacattttttctct----aatgtttggatgtttgatgtgatatt------tctttgtcttgaacag---

upper sequence: GLYMA15G22050.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G20400.2 (Arabidopsis thaliana), 5'ss of exon 2
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGATATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtgatgagaattttttgtccaagtctaaatttatgattaagggaaagcgttaaga--catgagatagaatattaccaattttttgtcatgacatgata----
||| ||||| || || || |||  || |||  |  | ||||| ||||||||  | ||||||||||| |||||||| ||||| |||||| | ||||| |||||||||      | ||| ||     || ||   ||  | ||||  | |  || | || |  | |  ||||   |  |   |||| | |||      |  | |    
CCGTCTGCCCGGATCAGTTCTAGCTTTTGAGAGCTGCGATATCTCAGGAGTCATTGTGCCATGGCTTTATGTTGGAATGTGCTTTTCAACTTTTTGTTGGgtaagtttc---attttcttagggtagactc--ttgctaattactgaatcgcatgaataatcttttgatatt-tcctggaaattatatgttgctgaaaaaaagctg

upper sequence: GLYMA15G22050.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0092g00210.t01 (Vitis vinifera), 5'ss of exon 6
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGATATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtgatgagaattttttgtccaagtctaaatttatgattaagggaaagcgttaagacatgagatagaatattaccaattttttgtcatgacatgata
||||||||| |||||||||||  ||| ||||  || |||||| ||||||||||| || |||||||| ||||| || ||||| || ||||||||||| ||||||||| ||| |||||  |    |||  ||  |  |     |||    ||   ||||   |  ||    ||    |  |  |  ||||  |       | 
CCGACTGCCTGGTTCTGTACTTTGTTTTGAACAAAATGATATCTCAGGAGTTCTGGTCCCATGGCTCTATGTCGGGATGTGCTTCTCATCATTTTGTTGGgtaagttatgggaattcctctatcaaagctgtacatgacgctaaaaagaaaaattaaataaaaagggcaaaaggcagaatctcgttgttcttcagctttg

upper sequence: GLYMA15G22050.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ29865 (Selaginella moellendorffii), 5'ss of exon 2
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGATATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtgatgagaattttttgtccaagtctaaatttatgattaagggaaagcgttaagacatgagatagaatattaccaattttttgtcatgacatgata
 ||||||  ||| || || ||    | |||||     || || || |||||  | |||||||||||||| ||||| |||||||| || || |||||||||||||||       |  ||   || | |   ||      ||   || |||| ||  ||||||  |    |  || |     ||||  |             
ACGACTGAAAGGATCAGTGCTTGAGTTTGAAGCCGACGAAATCTCGGGAGTCGTCGTGCCATGGCTGTACGTTGGGATGTGTTTCTCCTCCTTTTGCTGGgtaagt------tagcttgcatcaaggaacaag-----gaactagagaaa-cgagaagaca-aacgctgtttacttttctttttcag-------------

upper sequence: GLYMA15G22050.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ08267 (Selaginella moellendorffii), 5'ss of exon 2
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGATATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtgatgagaattttttgtccaagtctaaatttatgattaagggaaagcgttaagacatgagatagaatattaccaattttttgtcatgacatgata
 ||||||  ||| || || ||    | |||||     || || || |||||  | |||||||||||||| ||||| |||||||| || || |||||||||||||||       |  ||   || | |   ||      ||   || |||| ||  ||||||   | |      ||  |  |||||| |||          
ACGACTGAAAGGATCAGTGCTCGAGTTTGAAGCCGACGAAATCTCGGGAGTCGTCGTGCCATGGCTGTACGTTGGGATGTGTTTCTCCTCCTTTTGCTGGgtaagt------tagcttgcatcaaggaacaag-----gaactagagaaa-cgagaagacaaacgctg-----tttacttttttttttcag---------