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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGGATAGCAACTGTAGCAGCAGCAATTGATGATCGTAGATATAAAAACCATCTGATCCTCGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttccaacttccaactatgtttattaggatatgttgttcttaatcatgcactgggacatggagataaaatgctgatgattatggtggaaatcta...

Basic information

species Glycine max
transcript GLYMA15G17830.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G17830.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 7
CCATGGATAGCAACTGTAGCAGCAGCAATTGATGATCGTAGATATAAAAACCATCTGATCCTCGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttccaacttccaactatgtttattaggat--atgttgttcttaatcatgcactgggacatggagataaaatgctga-tgattatggtggaaatcta------------------------
|| |||||| | ||||| || || |||||||||||||| ||||| ||||| |||||||  || |||||||| |||||  | |||||| | ||||| || ||| |||||  |   |  |   | |   |||   |||  |     |  | | | ||  |    || |  |  |    || |||| |   | |  |||   | |                         
CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagactgttagtttattctgagtctctctattggttttttgatgaatcattatgcgtttgtgcag

upper sequence: GLYMA15G17830.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G19170.1 (Arabidopsis thaliana), 5'ss of exon 7
CCATGGATAGCAACTGTAGCAGCAGCAATTGATGATCGTAGATATAAAAACCATCTGATCCTCGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttccaacttccaactatgtttattaggatatgttgttcttaatcatgcactgggacatggagataaaatgctgatgattatggtggaaatcta
|| |||||| | ||||| || || |||||||||||||| ||||| ||||| ||||||| ||| || |||||||||||  | || ||  | || || || ||| |||      | |   |  | |   | || | ||      | |    | ||    |      |   ||| || || | | |  | |  || |      
CCCTGGATAACTACTGTCGCCGCTGCAATTGATGATCGAAGATACAAAAATCATCTGACCCTTGGGAATGGAAAAATGCTTGCAGGGATGGGCTTATCTCgtaagtaaaaagaatgtta-ttttacat-ttggcatgaccgatacgagtttatattttcatgttttt-gatgaattgtt-acgtattttctgcag-----

upper sequence: GLYMA15G17830.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 7
CCATGGATAGCAACTGTAGCAGCAGCAATTGATGATCGTAGATATAAAAACCATCTGATCCTCGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttcca-acttccaactatgtttattaggatatgttgttcttaatcatgcactgggacatggagataaaatgctgatgattatggtggaaatcta
|| ||||| ||| ||||||| |||||||| |||||||||||||| ||||||||||| |   | |||||||| ||||||||| | ||| |||| ||||||||| |||| |  | |     || ||||||          ||||    ||   | ||       | ||| |   ||  ||||||  | |   ||  ||    |
CCGTGGATTGCATCTGTAGCTGCAGCAATCGATGATCGTAGATACAAAAACCATCTTACTTTGGGAAATGGGAAAATCTTACCTGGAATTGGTTTGTCACgtaagttctatataacctgaattatgttggaattctactgtttaggttggccttgggaaacaatatg-attcaatctgctgaatactggagttcaatcaca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26048244|gb|CA784780.1|CA784780
EST:     CCATCTGATCCTCGGAAATGGAAAAATCTTAACCGGACTTGGATTGTCAC                         CTTCTACACGTTTAAACCAAACATACACATTGGTTGCTGCAACTGATGTGC
genomic: CCATCTGATCCTCGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttc ... gtttttgcagCTTCTACACGTTTAAACCAAACATACACATTGGTTGCTGCAACTGATGTGC
EST: gi|33387537|gb|CA850744.1|CA850744
EST:     CCATCTGATCCTCGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCAC                         CTTCTACACGTTTAAACCAAACATACACATTGGTTGCTGCAACTGATGTGC
genomic: CCATCTGATCCTCGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttc ... gtttttgcagCTTCTACACGTTTAAACCAAACATACACATTGGTTGCTGCAACTGATGTGC