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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGgtatttatctattttgtatgaaaattatagtcatgatgttgttcttgttctgaccaatgctttcctgcag

Basic information

species Glycine max
transcript GLYMA15G13910.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13910.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G058584_T01 (Zea mays), 5'ss of exon 8
CCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGgta---tttatctatt-ttgtatgaaaattatagtc---atgat--gttgttcttgttctgaccaatgctttcctgcag
|||||||| ||||| ||||| ||||||||||||||||| |  || || |  || ||||| |  | ||||||||||   || || |     || |     ||| |  |    |  ||  |||| |   |   |    | |  ||||||||||
CCTGCACAGATTGCTGGATGCAAAACTATTGTTCTTGCCACACCACCTAGCCGTGATGGTAGCATATGCAAGgtacacttgatatggaactgcaccgggattcttttttaaacaattggttgatggagcattatatacttgtttcctgcag

upper sequence: GLYMA15G13910.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G63890.1 (Arabidopsis thaliana), 5'ss of exon 6
CCTGCACAAATTGCAGGATGTAAAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGgtatt---------tatctattttgtatgaaaatt----atagtcatgatgttgttcttgtt-ctga-ccaatgctttcctgcag------
||||| |||||||| |||||||||||  |||||||||||| ||| |||| |  |||||| |  |  || |||||| |         | ||| ||||   ||  |||     |||||  | |  ||  ||||  | |||| |  ||| |||  |   |      
CCTGCTCAAATTGCTGGATGTAAAACAGTTGTTCTTGCAACTCCACCAAGTAAGGATGGAAGCATTTGTAAGgtagtactccgagctgtcttttttccctgggaatatccgatagtacttacatttatcttactgctgagcttatgttttaatcttgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811785|gb|BQ296263.1|BQ296263
EST:     AAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAG                         GAGGTACTGTATTGTGCAAAAAAGGCTGGGGTGACTCACATTCTCAA
genomic: AAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGgtatttatct ... tttcctgcagGAGGTACTGTATTGTGCAAAAAAGGCTGGGGTGACTCACATTCTCAA
EST: gi|254340468|gb|GR850770.1|GR850770
EST:     AAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAG                         GAGGTACTGTATTGTGCAAAAAAGGCTGGGGTGACTCACATTCTCAAAGCT
genomic: AAACTATTGTTCTTGCAAATCCTCCAACTCGGGATGGCACTACATGCAAGgtatttatct ... tttcctgcagGAGGTACTGTATTGTGCAAAAAAGGCTGGGGTGACTCACATTCTCAAAGCT