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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctagaatcctggtcctttcttgagaatgtacacttttgtgatttcatgctattcaatcttttgtcatgtttctggctgtctatgcag

Basic information

species Glycine max
transcript GLYMA15G13380.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G13380.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g41170.1 (Oryza sativa), 5'ss of exon 6
GTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctag------aatcctggtcctttcttgagaatgtacacttttgtgattt---catgctattca-atcttttgtcatgtttctggctgtctatgcag-----------------------------
|||||||||||| | ||||||||||| || |||||| |  | |||||||||||||||||||| | ||| |          || |  | |||||||||  || |  ||| || || |||   || ||| ||   |  | |  ||||   ||    |   |  ||                               
GTCATGATGCGTTTGTTCAGTCCCCGAAAGACAACACTATTATTTGTTATACGTGATAAAACCAGGgtttgcctctttgttctttattctttcttgaatatatttactgttatgttttgtgcaagctgtttggaaatataatcattgctccatttacttgggccaatctcagacacatcgttgttttcatgtag

upper sequence: GLYMA15G13380.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G390374_T01 (Zea mays), 5'ss of exon 6
GTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctagaatcctggtcctttcttgagaatgtacacttttgtgatttcatgctattcaatcttttgtcatgtttctggctgtctatgcag
|||||||||||| | || ||||| ||||| |||||| | || |||||||||||||||||||| | ||| |      |   |  | | |||      |  |  |||||    |     ||  |||   || | || ||   ||  | |  ||| ||
GTCATGATGCGTTTGTTTAGTCCTCGGAAGACAACACTACTATTTGTTATACGTGATAAAACCAGGgtttgcctctcctttattatattgcattcttgaatatttgttccattcacttaagcaaatcttagacacgtcattg--ttttcatgtag

upper sequence: GLYMA15G13380.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G45160.1 (Arabidopsis thaliana), 5'ss of exon 7
GTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctagaatcctggtcctttcttgagaatgtacacttttgtgatttcatgctattca-atcttttg-tcatgtttctggctgtctatgcag
|||||| ||||  | || || || || ||||||||  | |||||||| |||||||||||||||||||| | |  |  | |   ||   |  || | |  |   |||||| |||||  |  | | || || || |  ||||  | |            
GTCATGCTGCGATTGTTTAGCCCTCGTAAAACAACTCTTCTTTTTGTCATACGTGATAAAACAAAGgtttgg--tttttgcaattgagtatgattcttga---ttgtgagttcatatttcttagattttctgcttttgttcttag------------

upper sequence: GLYMA15G13380.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0116g00810.t01 (Vitis vinifera), 5'ss of exon 5
GTCATGATGCGTCTATTCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctagaatcctggtcc----tttcttgaga-------------atgta-----------cacttttgtgatttcatgctattcaatcttttgtcatgtttctggctgtctatgcag
|||||||||||  |||| || || || ||||| ||| | || |||||||||||||||||||||||||||| || ||    | |    |||||||| |             || ||           |  |||     ||| || | |||  |  || |  | ||||  || ||||  ||| ||
GTCATGATGCGCTTATTTAGCCCACGCAAAACGACACTACTGTTTGTTATACGTGATAAAACAAAGgtctggagtcaaactgcaaattttcttgaaaggtgtttgttgaaatatattgggctttagctttttcccctttttattccatttgaaattgttgcctgttcatgactgtacatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11689067|gb|BF596743.1|BF596743
EST:     TCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAG                         ACCCCACTTGAAAATTTGGAGCCTATTCTAAGAGAAGATATTCAGAAG
genomic: TCAGTCCCCGGAAAACAACATTGCTTTTTGTTATACGTGATAAAACAAAGgtctagaatc ... gtctatgcagACCCCACTTGAAAATTTGGAGCCTATTCTAAGAGAAGATATTCAGAAG