1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACTgtgagtactgaaaaaaaaaaaaaagagaacaatcaggtagaaatgattactgatgaaccacttttttgataaacatgaaatgctgggtcatatgtgagtg...
species | Glycine max |
transcript | GLYMA15G12780.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCACCACACTTGGAAGGAGAANAAGACCTGTCTAAATACACATTAACACT GCATCGACGTATTGT-CAGTACAAGACTGGATATTATTCCCTTTTACCTEST: gi|193512996|gb|FK470544.1|FK470544
genomic: TCACCACACT-GGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACTgtgagtactg ... tcttctgcagGCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCC-TTTTACCT
EST: ATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACT GCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTTACCTTCCEST: gi|192294520|gb|FG987449.1|FG987449
genomic: ATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACTgtgagtactg ... tcttctgcagGCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTTACCTTCC
EST: ATCACCACACTGGAAAGAGAAAAAGACCTGTCTAAATACACATTAACACT GCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTTACCTCCCEST: gi|7233280|gb|AW568628.1|AW568628
genomic: ATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACTgtgagtactg ... tcttctgcagGCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTTACCTTCC
EST: ATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACT GCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTTACCTTCCEST: gi|7926518|gb|AW832544.1|AW832544
genomic: ATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACTgtgagtactg ... tcttctgcagGCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTTACCTTCC
EST: ATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACT GCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTTACCTTCCEST: gi|5606131|gb|AI900229.1|AI900229
genomic: ATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACTgtgagtactg ... tcttctgcagGCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTTACCTTCC
EST: ATCACCACACTGGCAGGAGANAAAGACCTGTCTAAATACACATTAACACT GCATCGACGTATTGGTCAGTACAAGACTGCATATTATTCCTTTTTACCT-CEST: gi|9565120|gb|BE474629.1|BE474629
genomic: ATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACTgtgagtactg ... tcttctgcagGCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTT-ACCTTC
EST: ATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACT GCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTTACCTTCCEST: gi|14259182|gb|BG882090.1|BG882090
genomic: ATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACTgtgagtactg ... tcttctgcagGCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTTACCTTCC
EST: ATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACT GCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTTACCTTCC
genomic: ATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACTgtgagtactg ... tcttctgcagGCATCGACGTATTGTTCAGTACAAGACTGCATATTATTCCTTTTACCTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAGTTCCAGACTGCTTCAGGACAGATGATAGATCTGATCACCACACTGGAAGGAGAAAAAGACCTGTCTAAATACACATTAACACTgtgagtactgaaaaaaaaaaaaaagagaacaatcaggtagaaatgattactgatgaaccacttttttgataaacatgaaatgctgggtcatatgtgagtg
- - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaag