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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATCAAGTTTCTTGGCAACCCCGATGAAAGGgtaagaccatctttactgagttgaattattgtggcaaaggttacagttgatgcttaatttgaactgtttttcctaatggttttgacttgctacag

Basic information

species Glycine max
transcript GLYMA15G10370.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 6
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATCAAGTTTCTTGGCAACCCCGATGAAAGGgtaagacc-atctttactgagttgaattattgtggcaaaggttacagttgatgcttaatttgaactgtttttcctaatggttttgacttgctacag
 ||||| ||||| || |||||||| || |||||||| || || |  || |||||||||||||| ||||| ||||||||  | || |||||||| ||||||||||  || || ||  ||  ||   |||  ||||  |    ||   ||  ||   |||  | |  |||  | | |  |                  
TGTTGCACCAAAGTCCACTCTTGGGAACTGGATGAAGGAAATACAACGGTTTTGTCCTGTTCTGCGTGCTATCAAGTTCTTAGGAAACCCCGAAGAAAGGgtaatccccatgttatctctgtc--attcatgtga-acttcttgtggtatattgctaacat-atttgtcatacttggtcag---------------

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 6
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATCAAGTTTCTTGGCAACCCCGATGAAAGGgtaagaccatctttactgagttgaattattgtggcaaaggttacagttgatgcttaatttgaactgtttttcctaatggttttgacttgctacag
 |||||||||||||| || ||||| || ||||||||||| ||||| || ||||||||||| || |||||  | || ||||| || || ||||| ||||| |||||  |||  |  ||   ||  |||    ||  || |||| || || ||    |  | | |   || |     ||   ||| |  |  | |||
AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaag-tcataatagctc--ttacatt----tg--aatggttgca-tttatatgcacctggcaggattctg--agatatattttaaataatgcag

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 5'ss of exon 6
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATCAAGTTTCTTGGCAACCCCGATGAAAGGgtaagaccatctttactgagttgaattattgtggcaaaggttacagttgatgcttaatttgaactgtttttcctaatggttttgacttgctacag
||||||||||||||| || ||||| ||||||||||| || ||||| || ||||||||||| || |||||  | ||||| ||||| || || || || |||||||| |         |||| ||   |    |  || |  ||   ||  | | |||        |    |    ||||  |   |  || | |||
GGTTGCTCCAAAATCAACACTTGGTAATTGGATGAACGAAATTCGCCGGTTTTGTCCTGTCCTACGTGCTGTGAAGTTCCTTGGTAATCCTGAGGAGAGGgtaagtca--------tgagctgt-ctgccatttcagaatttcatgtaaacgtttatcccaggat----tctgaaatgtctgctaactgatgcag

upper sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATCAAGTTTCTTGGCAACCCCGATGAAAGGgtaagaccatctttactgagttgaattattgtggcaaaggttacagttgatgcttaatttgaactgtttttcctaatggttttgacttgctacag
 ||||| |||||||| |||||||| || ||||||||||| ||||| || |||||||| ||||| |||||  | ||||||||||| || || |||||||||||  | |  ||        |      | |    | ||   ||    ||  |      |||  ||||   ||    |    || | ||  || |||
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtgtgtcattc------aggccctgctttcagagtaattcttttt-ttatttacagttttccactgcactttgctaacacttcgtct--ctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193658187|gb|FK602928.1|FK602928
EST:     AAGTTTCTTGGCAACCCCGATGAAAGG                         AGACATATCAGAGATGAATTGTTGGTTGCCGGGAAGTTTGATGTTTGTGTC
genomic: AAGTTTCTTGGCAACCCCGATGAAAGGgtaagaccat ... cttgctacagAGACATATCAGAGATGAATTGTTGGTTGCCGGGAAGTTTGATGTTTGTGTC
EST: gi|193657786|gb|FK607245.1|FK607245
EST:     AAGTTTCTTGGCAACCCCGATGAAAGG                         AGACATATCAGAGATGAATTGTTGGTTGCCGGGAAGTTTGATGTTTGTGTC
genomic: AAGTTTCTTGGCAACCCCGATGAAAGGgtaagaccat ... cttgctacagAGACATATCAGAGATGAATTGTTGGTTGCCGGGAAGTTTGATGTTTGTGTC