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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTCTCTTGACACAACATGGGAAGAAAGCTTTTCCAAGAATGAAGCATTCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttcccattttttgttggttagttttgatactgaaatttaataaatttctcaagatagaaagctccaaccaatcttctggaaatatctcaacctaat...

Basic information

species Glycine max
transcript GLYMA15G10030.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10030.1 (Glycine max), 5'ss of exon 6
lower sequence: AC155496.2_FGT009 (Zea mays), 5'ss of exon 6
GGCTTCTCTTGACACAACATGGGAAGAAAGCTTTTCCAAGAATGAAGCATTCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttcccattttttgttggttagtt--ttgatactgaaatttaataaatttctcaagatagaaagctccaaccaatcttctggaaatatctcaacctaat
||| || || |||| || || ||||||||| ||| ||||||| || || ||||  || ||||| ||||||||||||||||| || |||||||| || ||||| | |   ||||||| ||   || ||   || |  |  | ||| | |   || |||   ||   |  || |   |||  | |  | | || |||  ||   
GGCATCCCTCGACAAAATATTGGAAGAAAGTTTTGCCAAGAACGAGGCTTTCTCCAATACCATAAAAGATTCATTTGAGCACCTTATCAATCTACGACAGgtgcctg--attttttattttctacttgactggtgtttcagttttacagtattgtcattttattgatgtcaatgtaattctttttatagatgtcattctgtc

upper sequence: GLYMA15G10030.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G46210.1 (Arabidopsis thaliana), 5'ss of exon 6
GGCTTCTCTTGACACAACATGGGAAGAAAGCTTTTCCAAGAATGAAGCATTCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttcccatt--ttttgttggttagttttgatactgaaatttaataaatttctcaagata-gaaagctccaaccaatcttctggaaatatctcaacctaat
|||||||||||||| || ||||||||| ||||||| |||||| ||| ||||  ||||||| || |||||||| ||||||||||| || |||||||| ||||||      | |  |||| ||| ||| |               |||||| |||      ||   |||||  ||  |    |  ||   | || |||||||   
GGCTTCTCTTGACATAATATGGGAAGAGAGCTTTTACAAGAACGAATCATTTGGTAACACAATCAAAGATTCGTTTGAGCATCTGATTAATCTTCGACAGgtatcaaatagtgattttcttgattattgcctgagtctcttgctaataattttactttcatgtaaaagcaacatactgattattgtggaaatgtcaacct---

upper sequence: GLYMA15G10030.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 6
GGCTTCTCTTGACACAACATGGGAAGAAAGCTTTTCCAAGAATGAAGCATTCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttcccattttttgttggttagttttgatactgaaatttaataaatttctcaagatagaaagctccaaccaatct--tctggaaatatctcaacctaat
|||||||||||| |||| |||||||||||||||||| | |||||||||||| || |||||||| |||||| ||||||| |||||||| ||||| ||||||||    |  | | ||||   |||  | ||        ||||  | |  ||  | |  |  ||  |     |  || ||  ||| ||  ||  |  |    | 
GGCTTCTCTTGATACAATATGGGAAGAAAGCTTTTCAAGGAATGAAGCATTTTGCAACACCATAAAAGATGCATTTGAACATCTCATTAATCTCCGTCAGgt-tagcataatctttgc-agttgctcttcccttcttaattgcaaagtttatttattaatgattgtatagagaaacctattcttgatgtaatttgatgagaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208129818|gb|GD933206.1|GD933206
EST:     TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAG                         AACCGGCCTGCAGAGTTG
genomic: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttccca ... cccttgccagAACCGGCCTGCAGAGTTG
EST: gi|193652971|gb|FK600005.1|FK600005
EST:     TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAG                         AACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCA
genomic: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttccca ... cccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCA
EST: gi|193571679|gb|FK527688.1|FK527688
EST:     CTGTAACACCATTAAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAG                         AACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCA
genomic: CTGTAACACCATTAAA-GATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttccca ... cccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCA
EST: gi|193703941|gb|FK645189.1|FK645189
EST:     TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAG                         AACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCA
genomic: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttccca ... cccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCA
EST: gi|193671264|gb|FK607856.1|FK607856
EST:     TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAG                         AACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCA
genomic: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttccca ... cccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCA
EST: gi|193546771|gb|FK500470.1|FK500470
EST:     TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAG                         AACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAAACTTCGTGC
genomic: TCTGTAACACCATTAAAGATTCATTTGAGCATCTCATCAATCTTCGTCAGgtacttccca ... cccttgccagAACCGGCCTGCAGAGTTGATTGCCAAGTTTTTGGATGAGAAA-CTTCGTGC