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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATGgtaaagaaaatgctcagtttagctccataatctctttatacactatttatgcttagagaaatgcaatttcacgcgaaaactatttatgaaaagcaacata...

Basic information

species Glycine max
transcript GLYMA15G07970.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07970.4 (Glycine max), 5'ss of exon 7
lower sequence: AT5G01230.1 (Arabidopsis thaliana), 5'ss of exon 7
GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATGgtaaagaaaatgctcagtttagctccataatctctttatacactatttatgcttagagaaatgcaatttcacgcgaaaactatttatgaaaagcaacata
||||||||||| ||||| || ||||| || ||||| ||||| ||||||||||| || ||||||||| | | |    |   |  ||   |   |  |  ||| |    |||||||   | ||| ||  ||| ||   ||     |||               
GTCATTAGACACTTTGACGGCTGCAAAGCGGACCTGGTTGTCTGTGATGGTGCTCCAGATGgtaaa-acagtagataaagtgtctgtctcgccgttcaatatatacgttatgctataaaaaacgcc-ttttac---aatttggtttgcag-----------

upper sequence: GLYMA15G07970.4 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g01960.t01 (Vitis vinifera), 5'ss of exon 6
GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATGgtaaagaaa---atgctcagtttagctccataatctctttatacactatttatgcttagagaaatgcaatttc----acgcgaaaactatttatgaaaagcaacata
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| | | ||   ||  |   || | || |||  | | |   |   || ||| | |    ||   |    |||     |   ||  | | | | |||  |    ||  
GTCATTAGGCATTTTGATGGATGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgttaggcaacatatattgttttcaacttcatggtttatgctt---ctgtttctaccagcagtggtttgtttttcttaagttgatcagtttctgtgatgatttgcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7926380|gb|AW832406.1|AW832406
EST:     TTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATG                         TTACTGGCCTTCATGACATGGATGAATNTGTACAATCCCAACTCTTACTTG
genomic: TTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATGgtaaagaaaa ... ttttttgcagTTACTGGCCTTCATGACATGGATGAATTTGTACAATCCCAACTCTTACTTG
EST: gi|193323195|gb|FK291587.1|FK291587
EST:     TTTGATGGTTGCAAGGCTGACCTAGTAGTGTGTGATGGTGCGCCTGAATG                         TTACTGGCCTT
genomic: TTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGA-TGgtaaagaaaa ... ttttttgcagTTACTGGCCTT
EST: gi|151411265|gb|EV281076.1|EV281076
EST:     TTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATG                         TTACTGGCCTTCATGACATGGATGAATTTGTACAATCCCAACTCTTACTTG
genomic: TTTTGATGGTTGCAAGGCTGACCTAGTTGTGTGTGATGGTGCGCCTGATGgtaaagaaaa ... ttttttgcagTTACTGGCCTTCATGACATGGATGAATTTGTACAATCCCAACTCTTACTTG