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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGCCGCCATTTTTCCCAATTATCCATCATGATATTGCTAATGAAATACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatcccatcttttgctccattgcaatatgttttgtatcattgagttgtttttaagccattcttgagggcgtctcatgcgcattgattatttcat...

Basic information

species Glycine max
transcript GLYMA15G07480.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07480.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 5'ss of exon 6
AATTGGCCGCCATTTTTCCCAATTATCCATCATGATATTGCTAATGAAATACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatcccatcttttgctccattgcaatatg----ttttgtatcattgagttgtttttaagccattcttga-gggcgtctcatgcgcattgattatttcat
|| ||||| |||||| | ||| | ||||||||||||||  | ||||| ||||| | ||| ||||||||| |||| |||||||||||| | |||||  | |||| | | ||  ||  |  | | |     |   ||    | ||| |     |    ||||| |   |||  | ||   || | | |  |   |  |   ||    
AACTGGCCTCCATTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCATCATTTCTTGgtatgct-tctgattgtcagattcccaaaatcttgatgctcttgcacttcggtaacgttttaactgcataatggacaagcattttagtcttctacaaagtt----

upper sequence: GLYMA15G07480.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G041181_T01 (Zea mays), 5'ss of exon 6
AATTGGCCGCCATTTTTCCCAATTATCCATCATGATATTGCTAATGAAATACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatcccatcttttgctccattgcaatatgttttgtatcattgagttgtttttaagccattcttgagggcgtctcatgc-gcattgattatttcat----
|||||||| || ||| | ||| | ||||||||||||||  | ||||| ||||| | ||| ||||||||| |||| |||||||||||| | || ||  | |||| | |  | |   || | |    |    | |  |||        ||| |  | || ||     ||||       | | |||  ||| ||   || |  |    
AATTGGCCTCCTTTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATATGTTGCATTTGCGTCGTTTCTTGgtatgctgcctctgattct-caatgtcatgaaacctttcactctgatgaataatcttcaatattctcttt----tatttaatgttgcaatggacatgttttccat

upper sequence: GLYMA15G07480.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 6
AATTGGCCGCCATTTTTCCCAATTATCCATCATGATATTGCTAATGAAATACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatcccatcttttgctccattgcaatatgttt-tgtatcattgagttgtttttaagccattcttgagggcgtctcatgcgcattgattatttcat
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||  ||||||||||||||||||||  |||| ||||||| ||      ||    |  |  | |   ||||  || | | || || | |   | || | |   |     |    | | ||   | |  |   |   ||
AATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTATGTTGCATTTACGACATTCTTAGgtatgtctcttaataagatagtg-actttgatattcttatatttcttttactaaatattcaacttcttgcatgcaaattttatattcctctagattcagat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183413|gb|HO028626.1|HO028626
EST:     ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAG                         GATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAG
genomic: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatc ... tattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAG
EST: gi|21994675|gb|BQ786203.1|BQ786203
EST:     ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAG                         GATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGA
genomic: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatc ... tattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGA
EST: gi|16343904|gb|BI969499.1|BI969499
EST:     ACCAANNCATCTTCAAAGANNNNAGTATGTTGCANNNACTTCATTGTTAG                         GATTGGCATTGTGCCTCACATGGAATATGGTAGCTGTCACTTCAGCTTGGA
genomic: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatc ... tattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGA
EST: gi|38192157|gb|CF921363.1|CF921363
EST:     ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAG                         GATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGA
genomic: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatc ... tattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGA
EST: gi|254315478|gb|GR825287.1|GR825287
EST:     ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAG                         GATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGA
genomic: ACCAATTCATCTTCAAAGATTGCAGTATGTTGCATTTACTTCATTGTTAGgtaagttatc ... tattatgcagGATTGGCATTGTGCCTCACATGGAATATTGTAGCTGTCACTTCAGCTTGGA