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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGATGGCCAGATATGCTCGCCGGGAAGTAAGTTGTATGACCTTAACAGgtaaactctgtctttgtacttttctgaaagaactgtttatatatgtattacattattgatcatgaagtggatgagaaacaatgggccaatgcctgctgct...

Basic information

species Glycine max
transcript GLYMA15G06170.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193377458|gb|FK340156.1|FK340156
EST:     AAGTAAGTTGTATGACCTTAACAG                         ATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
genomic: AAGTAAGTTGTATGACCTTAACAGgtaaactctg ... gaattggcagATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
EST: gi|193653367|gb|FK594759.1|FK594759
EST:     AAGTAAGTTGTATGACCTTAACAG                         ATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
genomic: AAGTAAGTTGTATGACCTTAACAGgtaaactctg ... gaattggcagATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
EST: gi|208281369|gb|GE073727.1|GE073727
EST:     GCCGGGAAGTAAGTTGTATGACCTTAACAG                         ATAAAGAAGCACTATTTTCAGGGAATTTTATTGTTCACCTCTTTG
genomic: GCCGGGAAGTAAGTTGTATGACCTTAACAGgtaaactctg ... gaattggcagATAAAGAAGCACTATTTTCAGGGAATTTTAT-GTTCACCTCTTTG
EST: gi|193443668|gb|FK405634.1|FK405634
EST:     GATATGCTCGCCGGGAAGTAAGTTGTATGACCTTAACAG                         ATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
genomic: GATATGCTCGCCGGGAAGTAAGTTGTATGACCTTAACAGgtaaactctg ... gaattggcagATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
EST: gi|208277202|gb|GE077877.1|GE077877
EST:     AAGTAAGTTGTATGACCTTAACAG                         ATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
genomic: AAGTAAGTTGTATGACCTTAACAGgtaaactctg ... gaattggcagATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
EST: gi|208243260|gb|GE038408.1|GE038408
EST:     CGCCGGGAAGTAAGTTGTATGACCTTAACAG                         ATAAAGAAGCACTATTTTCAGGGAATTTT
genomic: CGCCGGGAAGTAAGTTGTATGACCTTAACAGgtaaactctg ... gaattggcagATAAAGAAGCACTATTTTCAGGGAATTTT
EST: gi|207747424|gb|GD721291.1|GD721291
EST:     GATATGCTCGCCGGGAAGTAAGTTGTATGACCTTAACAG                         ATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
genomic: GATATGCTCGCCGGGAAGTAAGTTGTATGACCTTAACAGgtaaactctg ... gaattggcagATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
EST: gi|207704339|gb|GD685069.1|GD685069
EST:     AAGTAAGTTGTATGACCTTAACAG                         ATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
genomic: AAGTAAGTTGTATGACCTTAACAGgtaaactctg ... gaattggcagATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
EST: gi|208175717|gb|GD973794.1|GD973794
EST:     TATGCTCGCCGGGAAGTAAGTTGTATGACCTTAACAG                         ATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG
genomic: TATGCTCGCCGGGAAGTAAGTTGTATGACCTTAACAGgtaaactctg ... gaattggcagATAAAGAAGCACTATTTTCAGGGAATTTTATGTTCACCTCTTTGAAGCATG