1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGAATTCAAGAGAATTGTTTCACCCTTGAAGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatctctccccactcctttaagatcttcaatcctgttccgtatttgggtaattttatttcccatctttattttatcagtgaaaagcaatactcaa...
species | Glycine max |
transcript | GLYMA15G05740.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTG GTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAGEST: gi|18848529|gb|BM567714.1|BM567714
genomic: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatct ... cttgctgtagGTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
EST: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTG GTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAGEST: gi|162286168|gb|FC456616.1|FC456616
genomic: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatct ... cttgctgtagGTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
EST: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTG GTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAGEST: gi|24205294|gb|BU964547.1|BU964547
genomic: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatct ... cttgctgtagGTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
EST: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTG GTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAGEST: gi|16106332|gb|BI894072.1|BI894072
genomic: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatct ... cttgctgtagGTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
EST: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTG GTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAGEST: gi|21887065|gb|BQ740278.1|BQ740278
genomic: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatct ... cttgctgtagGTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
EST: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTG GTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAGEST: gi|254327975|gb|GR834940.1|GR834940
genomic: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatct ... cttgctgtagGTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
EST: GCTGCATTCCCTGACCAACAAGGTTTCTTG GTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAGEST: gi|254327974|gb|GR834939.1|GR834939
genomic: GCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatct ... cttgctgtagGTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
EST: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTG GTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAGEST: gi|21887213|gb|BQ740426.1|BQ740426
genomic: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatct ... cttgctgtagGTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
EST: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTG GTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAGEST: gi|8670281|gb|BE191388.1|BE191388
genomic: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatct ... cttgctgtagGTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
EST: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTG GTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAGEST: gi|15200978|gb|BI424629.1|BI424629
genomic: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatct ... cttgctgtagGTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
EST: TGACCAACAAGGTTTCTTG GTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAGEST: gi|15000181|gb|BI320995.1|BI320995
genomic: TGACCAACAAGGTTTCTTGgtatgcatct ... cttgctgtagGTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
EST: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTG GTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
genomic: AGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatct ... cttgctgtagGTTGGATCAATAGAAGGAAGAGTTGGGGTGCATCATTTGGACGATAGTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAATTCAAGAGAATTGTTTCACCCTTGAAGTATCAAACAAGGTGCCTTGCTGCATTCCCTGACCAACAAGGTTTCTTGgtatgcatctctccccactcctttaagatcttcaatcctgttccgtatttgggtaattttatttcccatctttattttatcagtgaaaagcaatactcaa
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagcaa