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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTGTTGGGATTACATTTCCGAGCTCCAGAGAATATGAAGGCCTTCGTGGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTCTGGAGATGgtaaatacctccactgatgcaagttgtttaaaatatgatatgcaattttttatgaattaaagagcgagctatattttggtataaatcttggtaaattgac...

Basic information

species Glycine max
transcript GLYMA15G05150.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15663521|gb|BI700892.1|BI700892
EST:     GCAGCGTCAGGAGAGTTTACCTTCTGGAGATGAAG                       
genomic: GCAGCGTCAGGAGAGTTTACCTTCTGGAGAT---Ggtaaatacct ... ctcaaaga
EST: gi|21677331|gb|BQ629682.1|BQ629682
EST:     GGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTCTGGAGATG                         GGCAGCTCTTGATTCTTCCTAAAGGCTTGCTGTTAGTTTCCCATGAACCGA
genomic: GGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTCTGGAGATGgtaaatacct ... ctcaaagaagGGCAGCTCTTGATTCTTCCTAAAGGCTTGCTGTTAGTTTCCCATGAACCGA
EST: gi|8286107|gb|BE023666.1|BE023666
EST:     GGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTCTGGAGATGAAG                       
genomic: GGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTCTGGAGAT---Ggtaaatacct ... ctcaaaga
EST: gi|10237549|gb|BE806437.1|BE806437
EST:     GGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTATGGAGATG                         GGCAGCTCTTGATTCTTCCTAAAGGCTTGCTGTTAGTTTCCCATGAACCGA
genomic: GGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTCTGGAGATGgtaaatacct ... ctcaaagaagGGCAGCTCTTGATTCTTCCTAAAGGCTTGCTGTTAGTTTCCCATGAACCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCTGTTGGGATTACATTTCCGAGCTCCAGAGAATATGAAGGCCTTCGTGGAACATCATGAATCAGTGCAGCGTCAGGAGAGTTTACCTTCTGGAGATGgtaaatacctccactgatgcaagttgtttaaaatatgatatgcaattttttatgaattaaagagcgagctatattttggtataaatcttggtaaattgac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG