1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AACATATTGTCAGTGGTCACACACTTAAGCATCTGGTTGCAGCAATGGTTCCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAGgtatatgcatgtctgcaagactgcaacattaaaactgcatataatcaatggatttaaatatttctgaatttgaactgtgtacaagaaaacattctctaat...
species | Glycine max |
transcript | GLYMA15G05100.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTGAACCTGAGAG GCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGGEST: gi|208284472|gb|GE083746.1|GE083746
genomic: GTTGAACCTGAGAGgtatatgcat ... ctgcatgcagGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGG
EST: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAG GCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGGEST: gi|208330861|gb|GE128088.1|GE128088
genomic: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAGgtatatgcat ... ctgcatgcagGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGG
EST: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAG GCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGGEST: gi|8669706|gb|BE190813.1|BE190813
genomic: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAGgtatatgcat ... ctgcatgcagGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGG
EST: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGATAG GCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCATAGAGGG
genomic: CCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAGgtatatgcat ... ctgcatgcagGCAAAGTTTGCTTAAAACGTGGAGGGTTTCCTGGACGAAGTTCAGAGAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACATATTGTCAGTGGTCACACACTTAAGCATCTGGTTGCAGCAATGGTTCCTGTCTTCTTAACATTCATGCTTGCTAAGAGGAGTGTTGAACCTGAGAGgtatatgcatgtctgcaagactgcaacattaaaactgcatataatcaatggatttaaatatttctgaatttgaactgtgtacaagaaaacattctctaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG