Sequence
atgc intronic sequence ATGC exonic sequenceTCAATTTGCTGAGCACTTACAGCCTGAAATTGTATCCCATTATGAGAGTGTTCTTCCCTGCATTTTAAATGCTCTTGAGGATGTATCTGATGAAGTAAAGgtacacactggagaagagaaaggcttgtcaatacaaaaagaatattaccttagagctactaccaaaactaaatattaaatagattgtctgcatgttgtctaagcattagatttatattcatgcag
Basic information
species | Glycine max |
transcript | GLYMA15G05090.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G05090.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G408305_T01 (Zea mays), 5'ss of exon 9
TCAATTTGCTGAGCACTTACAGCCTGAAATTGTATCCCATTATGAGAGTGTTCTTCCCTGCATTTTAAATGCTCTTGAGGATGTATCTGATGAAGTAAAGgtacacactggagaagagaaaggc-ttgtcaatacaaaaagaatattaccttag-agctactaccaaaactaaatattaaatagattgtctgcatg-ttgtctaagcattagatttat--attcatgcag
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TCAGTTTGCTGAACACTTGCAACCAGAAATTTTATCTCATTATGCGAGTGTACTTCCATGCATTCTAAATGCTCTTGAAGACCCATCAGATGAAGTTAAGgtatagtcaacaaatgcggatgatgttttctattctaaatgggcagcaaggcaacaaccttttccataattgttta--ggttggatggtaaacttggcaatataataaattaattcatttgttcttgcag
upper sequence: GLYMA15G05090.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 5'ss of exon 6
TCAATTTGCTGAGCACTTACAGCCTGAAATTGTATCCCATTATGAGAGTGTTCTTCCCTGCATTTTAAATGCTCTTGAGGATGTATCTGATGAAGTAAAGgtacacactggagaagagaaaggcttgtcaatacaaaaagaatattaccttagagctactacc--aaaactaaatattaaatagattgtctgcatgttgtctaagcattagatttatattcatgcag
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TCAGTTTGCTGAGCATTTGCAGCCAGAGATTGTATCTCACTATGAAAGTGTTCTTCCTTGCATTTTAAATGCCCTTGAGGATGCATCTGATGAAGTGAAGgtatgtgtagtagatgggatcacttc--tggtgttgat--tatttttctttagaatttttgacttaaggctaattcttttgtacag-----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|163918319|gb|EH039094.1|EH039094EST: TTCTTCCCTGCATTTTAAATGCTCTTGAGGATGTATCTGATGAAGTAAAG GAGAAGTCATACTATGCGTTGGCTGCTTTTTGCGAGAACATGGGTGAAGAC
genomic: TTCTTCCCTGCATTTTAAATGCTCTTGAGGATGTATCTGATGAAGTAAAGgtacacactg ... attcatgcagGAGAAGTCATACTATGCGTTGGCTGCTTTTTGCGAGAACATGGGTGAAGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAATTTGCTGAGCACTTACAGCCTGAAATTGTATCCCATTATGAGAGTGTTCTTCCCTGCATTTTAAATGCTCTTGAGGATGTATCTGATGAAGTAAAGgtacacactggagaagagaaaggcttgtcaatacaaaaagaatattaccttagagctactaccaaaactaaatattaaatagattgtctgcatgttgtctaagcattagatttatattcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG