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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttgagagtctgcttttgtatatctaataattggcctttcaattgaaaatcatacttattgatgtcaactgttgaagaaattgcattctacttc...

Basic information

species Glycine max
transcript GLYMA15G04500.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04500.2 (Glycine max), 5'ss of exon 6
lower sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtat-----agtttgagagtctgcttttgtatatctaataattggcctttcaattgaaaatcatacttattgatgtcaactgttgaagaaattgcattctacttc
|||| || || ||| | ||  ||||||||||||| ||||||||| | ||||| || || ||||| ||||||||||||||||| || || ||||| |     | || |  | ||     | | | |  |  ||  ||   | |   ||   | | ||  | ||  ||        |      ||| |||         
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttgttaaacttcgttaatcaaaactcgcaaaa-tgctagctgatatattt-ttatgacttatgatcatatatccttttcatctttctaatggcag--------

upper sequence: GLYMA15G04500.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttgagagtctgcttttgtatatctaataattggcctttcaattgaaaatcatacttattgatgtcaactgttgaagaaattgcattctacttc
|||| || |||||||| |||||||||||||||| ||| ||||||||||| || |||||||||||||| |||||||||||||| || || |||||      || || | |   | | |     ||  |  |   | |  |||   ||    || ||| |||| | |  |||| | | |               
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcg---tgtgaatatagatatattctcatatcacct--tcatataatcagaatcgttagttactgatctaatatgtttatgcag--------------

upper sequence: GLYMA15G04500.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 5
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgt--atagtttgagagtctgcttttgtatatctaataattggcctttcaattgaaaatcatacttattgatgtcaactgttgaagaaattgcattctacttc
||||||| ||||| || ||||| ||||||||| |||| ||||| |||||||| || || ||||||||||| || ||| ||||||| ||||||||   ||  || |   | | ||||||   | | |     |    | ||| |     | ||||  | |||   |  | | ||     |  ||  ||  ||   
ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatatttatgctatacttttgctcaccaatatgcttcattatcagtgctttagcatatat-ttgtcatgtattatttctctatctgatttggacag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611728|gb|DB962965.1|DB962965
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttg ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
EST: gi|8827206|gb|BE210936.1|BE210936
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttg ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
EST: gi|151412093|gb|EV281905.1|EV281905
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAGTACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttg ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
EST: gi|192316740|gb|FK006443.1|FK006443
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttg ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
EST: gi|213591579|gb|DB955787.1|DB955787
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttg ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
EST: gi|213592188|gb|DB965979.1|DB965979
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCT
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttg ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCT
EST: gi|192316741|gb|FK006444.1|FK006444
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttg ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
EST: gi|16279667|gb|BI943554.1|BI943554
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttg ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
EST: gi|192317198|gb|FK007909.1|FK007909
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATGAAGACAAATGTGTTTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttg ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
EST: gi|19453064|gb|BM954474.1|BM954474
EST:     ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttg ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
EST: gi|192296657|gb|FG991225.1|FG991225
EST:     ATCTTGCATGCCCTGCCTCTCCGATTTTCTACAAATACAATCCAGTAAAG                         ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG
genomic: ATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgtatagtttg ... tactttacagACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTCGCTAAG