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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTGGGGTGTTTGGCCTAGGTCCATGCTGATTTGAGGAAATGGGTTCATGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgcatccaatttaccctgtatcattgtataatgtatcatatgtagtttacttgagttgtatgtcaatgaataaacatggtaagtttcttatccaatgaagcattcattaactgcag

Basic information

species Glycine max
transcript GLYMA15G04290.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193537914|gb|FK495075.1|FK495075
EST:     GCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: GCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193581120|gb|FK535459.1|FK535459
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193370577|gb|FK334101.1|FK334101
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTACCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193598751|gb|FK552019.1|FK552019
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTGAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|208038499|gb|GD833251.1|GD833251
EST:     TGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193687214|gb|FK630875.1|FK630875
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGGTGTT
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGA-Ggtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTT
EST: gi|193327731|gb|FK295054.1|FK295054
EST:     AAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGACCCGATGTT
genomic: AAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAG-CCCGATGTT
EST: gi|7925193|gb|AW831219.1|AW831219
EST:     TGACAATGTGAGTGCCGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|48574787|gb|CO036077.1|CO036077
EST:     TGACAATGTGAGTGCCGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAGCTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|208313394|gb|GE115978.1|GE115978
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCCTCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193413289|gb|FK377342.1|FK377342
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193331092|gb|FK293252.1|FK293252
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193663871|gb|FK612877.1|FK612877
EST:     GCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: GCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193354448|gb|FK321196.1|FK321196
EST:     TGAAGTCGCTGTCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGAAGTTGCTG-CATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193445476|gb|FK413967.1|FK413967
EST:     TGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|208154245|gb|GD958406.1|GD958406
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193608058|gb|FK555711.1|FK555711
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|208303964|gb|GE105683.1|GE105683
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193607426|gb|FK559153.1|FK559153
EST:     TGACAATGTGAGTGCTGGAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|7028322|gb|AW458105.1|AW458105
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193664847|gb|FK610849.1|FK610849
EST:     TGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193559178|gb|FK515937.1|FK515937
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193722852|gb|FK657904.1|FK657904
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGGTGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|208295542|gb|GE090475.1|GE090475
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193647093|gb|FK593118.1|FK593118
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|207753705|gb|GD723303.1|GD723303
EST:     CTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: CTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|193467546|gb|FK431315.1|FK431315
EST:     TTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
EST: gi|20813897|gb|BQ298375.1|BQ298375
EST:     TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAG                         GTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG
genomic: TGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgc ... ttaactgcagGTTCTGTAAATGGAGGAAACTGCAAAGAATTGGCCGCACAGCCCGATGTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGTGGGGTGTTTGGCCTAGGTCCATGCTGATTTGAGGAAATGGGTTCATGACAATGTGAGTGCTGAAGTTGCTGCATCTGTAAGAATTATCTATGGAGgtaatcttgcatccaatttaccctgtatcattgtataatgtatcatatgtagtttacttgagttgtatgtcaatgaataaacatggtaagtttcttatccaatgaagcattcattaactgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC