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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTTATTTCAAATTAAAAATCCTTCTGCTGAAAGAGTTACTCACTGTGGGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGgtatgtcgtttcctctttgtttctcgtattttttctgaactttttttgcttaatgaattttccttcctttatttacagtttataacgttcctctgtttttgttgtcag

Basic information

species Glycine max
transcript GLYMA15G04140.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04140.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g05010.t01 (Vitis vinifera), 5'ss of exon 1
CATGTTATTTCAAATTAAAAATCCTTCTGCTGAAAGAGTTACTCACTGTGGGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGgtatgtcgtttcctctttgtttctcgtattttttctgaactttttttgcttaatgaattttccttcctttatttacagtttataacgttcctctgtttttgttgtcag------
 ||||||||  || | ||||||||| |  ||| | |||||||||| ||||||||||||||||||    |  | || || |  ||  |  | |||| |||||||||    ||| | | |    ||  | | |||   |||  || |    ||| |    ||    |  | | |||    ||| |    ||  ||  ||||| |    |       
AATGTTATTCAAACTCAAAAATCCTGCCTCTGGACGAGTTACTCATTGTGGGGTGCTAGAATTCACTGCAAAGGAGGGCACAATGCACTTACCATCCTGGgtatgcgtgttcttttctcccccttttctctttgtggaatgttatgattttagttctattgtgatgatcttttttt--ttttttctttttttccttttttatctcaaactttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707768|gb|BW683660.1|BW683660
EST:     GGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGG                         ATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAAC
genomic: GGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGgtatgtcgtt ... ttgttgtcagATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAAC
EST: gi|298175906|gb|HO015311.1|HO015311
EST:     GGGTGCTAGAATTCGTATCTGATGAAGGGGTCATATATATCCCATACTGG                         ATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAAC
genomic: GGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGgtatgtcgtt ... ttgttgtcagATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAAC
EST: gi|37993996|gb|CF805742.1|CF805742
EST:     GGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGG                         ATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAAC
genomic: GGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGgtatgtcgtt ... ttgttgtcagATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAAC
EST: gi|16349341|gb|BI974936.1|BI974936
EST:     GGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGG                         ATGAAGGAAAATATGCTCCTCCAAGA
genomic: GGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGgtatgtcgtt ... ttgttgtcagATGATGGAAAATATGCTCCTCCAAGA
EST: gi|120533678|gb|EH261811.1|EH261811
EST:     GGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGG                         ATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAAC
genomic: GGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGgtatgtcgtt ... ttgttgtcagATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAAC
EST: gi|15664016|gb|BI701387.1|BI701387
EST:     GGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGG                         ATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAAC
genomic: GGGTGCTAGAATTCGTATCTGATGAAGGGATCATATATATCCCATACTGGgtatgtcgtt ... ttgttgtcagATGATGGAAAATATGCTCCTCCAAGAGGGAGACATTGTAAAAGTGAAAAAC