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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCAgtatgttctgtgaagtacatttatgcagaactatcttttccatggtatcttaattttccttttgcttcttttgaccccagtcatcccttgttttcaaatcaactgcgtag

Basic information

species Glycine max
transcript GLYMA15G03930.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03930.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os10g13940.1 (Oryza sativa), 5'ss of exon 6
TGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCAgtatgttctgtgaagtacatttatg-cagaactatcttttccatggtatcttaattttccttttgcttcttttgaccccagtcatcccttgttttcaaatcaactgcgtag----------------------
|||| ||||||| |||||||||||   | |||||  |||| |||||||| ||||  |  ||||||||||||||||| || || ||||||||||| ||||||||      |    |  ||||   |  | | | |||| |  |  |  ||   |  |    |   ||            | || ||||  ||  |  ||   ||  |||                      
TGGCTGGAGATGCAACCAACATAGTTTTGGATCCAATATTTATGTTTGTCTTCCAGTATGGTGTCAGTGGTGCAGCAATTGCTCATGTTATATCACAgtatgtagcacaattctctcttataatatcattgttttttacccgtgaagttggatgacaaactatgtccaaaagtat--ataatacctttcttctacctcttgtg-atagtgtatggtggaaaattctgcag

upper sequence: GLYMA15G03930.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G870170_T02 (Zea mays), 5'ss of exon 6
TGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCAgtatgttc-tgtgaagtacattta---tgcagaactatcttttccatggtatcttaattttcc--ttttgcttcttttgaccccagtcatcccttgttttcaaatcaactgcgtag
|||| |||||||  | ||| ||||   | |||||  |||| |||||||| ||||  |  ||||| |||||||| |||||||| ||||||||||| ||||| || | |      | | |||    |   ||  |         ||     |  || |||    || |  | || ||  |    || ||    | |  |  ||    ||||    
TGGCTGGAGATGCGATCAATATAGTTTTGGATCCAATATTTATGTTTGTGTTCCAATATGGTGTTAGTGGTGCCGCCATCGCTCATGTTATATCACAgtacgtacataccttttgccttttccctatcgagatggaaggaatatacatccaaaagtttatgattcttgtgctcttatcttttgtgatagtgtatggtggaacattctgcag--

upper sequence: GLYMA15G03930.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g02140.t01 (Vitis vinifera), 5'ss of exon 6
TGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCAgtatgtt-ctgtgaagtacatttatgcagaactatcttttccatggtatcttaattttccttttgcttcttttgaccccagtcatcccttgttttcaaatcaactgcgtag
|||||||||| ||||| ||||||    |||| ||  |||| |||||||| ||||   |||||||| ||||||||||||| |||||||||||||||||||| ||| ||    | | ||  |    ||    ||            | |   ||||  |||   ||  |    |   |         |    ||   || | |    |||
TGGCAGGAGACGTAACAAACATAATTTTAGACCCGATATTTATGTTTGTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCAgtaagttacttcctattgcagctcaaaagctaaattacagtggcatcacccctatttgtcttacactattggcaaattctcatggttttcacatttgtatgatcactatag