Sequence
atgc intronic sequence ATGC exonic sequenceGCATAAGTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAGgtacccatgaacctattgatgtgcttatggatctgcaacattattattaattgttgaagcattacttatattgtatccaccctgatatgcttgttaataatggcacttcaatttgatgtttgtgacatgctttttcaacag
Basic information
species | Glycine max |
transcript | GLYMA15G03820.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G03820.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G20870.1 (Arabidopsis thaliana), 5'ss of exon 6
GCATAAGTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAGgtacccatgaacctattgatgtgcttatggatctgcaacattat-tattaattgttgaagcattacttatattgtatccaccctgatatgcttgttaataatggcacttcaatttgatgtttgtgacatgctttttcaacag
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GCATAAGCTTGCACAATTTTCCAGAAGGGATGGCTGTATTTCTCGGATCAATAAAGgtgaggattaaaaaacatgaaaaacagaaaatttcagggagcatgcatgcattctaacaatat-atctctatactatttgataacctgtgtcatctacgtatta-atatcaatatt-tgcttgttggattctacttca-cag
upper sequence: GLYMA15G03820.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 5'ss of exon 6
GCATAAGTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAGgtacccatgaacctattgatgtgcttatggatctgcaacat-tattattaattgttgaagcattacttatattgtatccaccctgatatgcttgttaataatggcacttcaatttgatgtttgtgacatgctttttcaacag
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GCATAAGCTTGCACAATTTTCCCGAGGGAATGGCTGTGTTCCTTGGATCAATGAAGgtaatatctgatcttttacattattctgggagtcttgagatgtgctataaacc-tttttccttcactgtcagaatacaatctcttatctgttt--tagctgtt---------------------------------------
upper sequence: GLYMA15G03820.2 (Glycine max), 5'ss of exon 6
lower sequence: EFJ32545 (Selaginella moellendorffii), 5'ss of exon 6
GCATAAGTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAGgtacccatgaacctattgatgtgcttatggatctgcaacattattattaattgttgaagcattacttatattgtatccaccctgatatgcttgttaataatggcacttcaatttgatgtttgtgacatgctttttcaacag
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GAATAAGCTTGCACAATTTTCCTGAGGGAATGGCTGTGTTCCTTGGGTCCATGAAGgta--tgaaacactaccgcttattgaaaaaacttccaaccttacg------cgttgctacatttcag--------------------------------------------------------------------------
upper sequence: GLYMA15G03820.2 (Glycine max), 5'ss of exon 6
lower sequence: EFJ16604 (Selaginella moellendorffii), 5'ss of exon 6
GCATAAGTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAGgtacccatgaacctattgatgtgcttatggatctgcaacattattattaattgttgaagcattacttatattgtatccaccctgatatgcttgttaataatggcacttcaatttgatgtttgtgacatgctttttcaacag
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GAATAAGCTTGCACAACTTTCCTGAGGGAATGGCTGTGTTCCTTGGATCCATGAAGgta--tgaaacactaccgcttattgaaaaaacttccaaccttacg------cgttgctacatttcag--------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213593225|gb|DB973530.1|DB973530EST: GTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAG GGCCTCCGTGTTGGCCTCAATTTAGCATTAGCCATTGCTCTGCACA
genomic: GTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAGgtacccatga ... ttttcaacagGGCCTCCGTGTTGGCCTCAATTTAGCATTAGCCATTGCTCTGCACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATAAGTTTGCACAATTTTCCAGAAGGAATGGCAGTGTTCCTTGGATCCTTAAAGgtacccatgaacctattgatgtgcttatggatctgcaacattattattaattgttgaagcattacttatattgtatccaccctgatatgcttgttaataatggcacttcaatttgatgtttgtgacatgctttttcaacag
- - - - - - - - - - - - AAGGAA