Sequence
atgc intronic sequence ATGC exonic sequenceGATACATTGTAGATATGCAATCCTTGGATTCAACAGTCTCCGAGATTAACCGATTACGTGATGAACAGTTGTATCCAAGACTTGTTCAGCTTGTTGATGGgtgagtaataatgtagaagtttttctttttcttcgattagtgatattcatccaccccatggggtggaaaataggagagagatagagagaaattgaaagaa...
Basic information
species | Glycine max |
transcript | GLYMA15G01790.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G01790.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g31580.1 (Oryza sativa), 5'ss of exon 3
GATACATTGTAGATATGCAATCCTTGGATTCAACAGTCTCCGAGATTAACCGATTACGTGATGAACAGTTGTATCCAAGACTTGTTCAGCTTGTTGATGGgtgagtaat----aatgtag---aagtttttctttttc--ttcgatta-gtgatattcatccaccccatggggtggaaaataggagagagatagagagaaattgaaagaa
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GGTACATAGTGGATATGCAATCCATGGATTCAACCGTCTCAGAAATAAACCGACTACGTGATAAACAGTTATACCCGAAGTTAGTGGACCTTGTTGATGGgtgagtattcttcaatctaagttaagtaatgatataaaagtttgattatgtgatacataatctctttgtactgtgat-----gctgctacatcgcttcatttttt-----
upper sequence: GLYMA15G01790.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G178319_T01 (Zea mays), 5'ss of exon 3
GATACATTGTAGATATGCAATCCTTGGATTCAACAGTCTCCGAGATTAACCGATTACGTGATGAACAGTTGTATCCAAGACTTGTTCAGCTTGTTGATGGgtgagtaataatgtagaa-----gtttttctttttcttcgattagtgatattcatccaccccatggggtggaaa-ataggagagagatagagagaaattgaaagaa
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GGTACATTGTAGACATGCAATCCATGGATTCAACAGTTTCAGAAATAAATCGGCTTCGGGATAGACAGTTATTCCCAAAGTTAATGGACCTTGTTGATGGgtgagtattcttttgcaacaattgattctcttatattttaatt-gtagcataccttgtgtacatttcattcaattgtaatggattgtttgtctgttacctt-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9985917|gb|BE659923.1|BE659923EST: CGATTACGTGATGAACAGTTGTATCCAAGACTTGTTCAGCTTGTTGATGG GATGGCCACTATGTGGAAAACCATGCTAGAGCACCATGTGAAGCAATCAGA
genomic: CGATTACGTGATGAACAGTTGTATCCAAGACTTGTTCAGCTTGTTGATGGgtgagtaata ... tggactgcagGATGGCCACTATGTGGAAAACCATGCTAGAGCACCATGTGAAGCAATCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATACATTGTAGATATGCAATCCTTGGATTCAACAGTCTCCGAGATTAACCGATTACGTGATGAACAGTTGTATCCAAGACTTGTTCAGCTTGTTGATGGgtgagtaataatgtagaagtttttctttttcttcgattagtgatattcatccaccccatggggtggaaaataggagagagatagagagaaattgaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggtgg