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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtgtaattatgttcttgttcctggatgtttcttttttaaaaaaaaaaaaaagtaaaaagaaaaactatgatcctatgatataatgcattgatgcaactgttatcatctcttttcag

Basic information

species Glycine max
transcript GLYMA15G01680.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G124886_T04 (Zea mays), 5'ss of exon 6
CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtgtaattatgttcttgttcctggatgtttcttttttaaaaaaaaaaaaaagtaaaaa--gaaaaactatgatcctatgatataatg-cattgatgcaactgttatcatctcttttcag
 || ||||||||||| |||||||| ||||| |||||||| |||||||| || ||||| |||||||||||||| ||||| || || ||||| ||||||||||| |   |    ||   ||     ||  |  ||    | ||      |  | |    |  || |  | |      | | |||   ||    ||||    || || |       | ||||
TCAAATATTTGAAGGGCATTCTCACTATGTGATGCAAGTTACATTTAACCCAAAAGATACAAACACCTTTGCTAGTGCTTCCCTGGATCGCACAATAAAGgtttgtgttatctccgctttaaaaattctggttggccacaatgttgcattatttggtaccgacaggcgacagctttttcatagcttgatggtgatatc-ctattttttgtcaatatcag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 7
CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtgtaattatgttcttgttcctggatgtttcttttttaaaaaaaaaaaaaagtaaaaagaaaaactatgatcctatgatataatgcattgatgcaactgttatcatctc---ttttcag
 || || ||||| || || ||||| |||||||||||||| |||||||| |||||||||||||| || ||||| ||||| ||||||||||| ||  ||||||| ||   || |  ||         | |||  ||||      ||  | || |||  ||       | |    || || ||   |  |  || |||| | |  | |  |    |||  ||
TCAAATTTTTGAGGGCCACTCTCACTATGTCATGCAAGTCACATTTAACCCCAAAGACACAAATACTTTTGCTAGTGCTTCTCTTGATCGTACTGTAAAGgtatacccatatgttt---------tattttgtttt------aatgataatgtattaatttctcgttttcctctttgctagcct-taacga-gcaattttctttacttgaaatttctag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G141587_T01 (Zea mays), 5'ss of exon 6
CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtgtaattatgttcttgttcctggatgtttcttttttaaaaaaaaaaaaaagtaaaaagaaaaactatgatcctatgatataatgcattgatgcaactgttatcatctcttttcag
 || ||||| ||||| |||||||| ||||| |||||||| |||||||| || ||||| || ||||||||||| ||||| || || ||||| ||||||||||| |   | |  |||      |  | |||    ||        | ||    |||  |         || | | | |   ||| |    || ||  |   | ||       | ||||
TCAAATATTCGAAGGGCATTCTCACTATGTGATGCAAGTTACATTTAACCCAAAAGATACCAACACCTTTGCTAGTGCTTCCCTGGATCGCACAATAAAGgtttg--tgtaatctctgctttaaaagttctggtt----ggtcacaatgttgtattatttgtcgtcattagcttttt-catagtttgatggtgatatcctaatttctgtctatcag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 5
CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtgtaattatgttcttgttcctggatgtttcttttttaaaaaaaaaaaaaagtaaaaagaaaaactatgatcctatgatataatgcattgatgcaactgttatcatctcttttcag
 || || ||||| || ||||| || ||||| ||||| || || || || || || || |  ||||| ||||||||||||||||||||||| || | |||||||    | ||    | ||   |         ||     |      |   ||| || |    | || || || | | |||     || |  || || |||                
TCAAATTTTTGAGGGACATTCACACTATGTGATGCAGGTTACTTTCAACCCAAAGGATATTAACACTTTTGCAAGTGCATCTCTTGATCGCACTACAAAGgtgcgcct-tgacaatattatggagcaagatgtt-----agttgcgactgagtcaagatgtgatct-tgttcat-tcatacttctcactc-tgaaattgtag--------------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 6
CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtgtaattatgttcttgttcctggatgtttcttttttaaaaaaaaaaaaaagtaaaaagaaaaactatgatcctatgatataatgcattgatgcaactgttatcatctcttttcag
 |||||||| || || || || || ||||| |||||||| ||||||||||| |||||||| ||||| ||||| |||||||| |||||||| || |||||||||     ||| |||    | | ||    || || |     |        |||           |  | || ||| | |   ||||||   | || ||                  
TCAGATATTCGAGGGACACTCACACTATGTGATGCAAGTCACATTTAATCCAAAAGACACCAACACTTTTGCCAGTGCATCCCTTGATCGTACCATAAAGgtgctgaaatggtctaa--cattgaaacatcattatggtttagtccgcttagtc----------cgctcattctacgtttacatgcat--gttcatcttcag--------------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 10
CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtgtaattatgttcttgttcctggat---gtttcttttttaaaaaaaaaaaaaagtaaaaagaaaaactatgatcctatgatataatgcattgatgcaactgttatcatctcttttcag
 || || || ||||| ||||| |||||||| |||||||| || || || ||||||||||| || || ||||| |||||||| ||||| || || ||||| ||   ||||   |     |  |   |      |  || ||  |     ||      |  | || || ||   | | | || | |  || ||   | || || || | | ||        
TCAAATTTTCGAAGGCCATTCCCATTATGTTATGCAAGTCACTTTCAACCCCAAAGACACCAATACTTTTGCTAGTGCATCCCTTGACCGTACCATAAAAgtaagattagtcttcaacttttaagttacaccttcttctttcattcccaatttcccattatgagaagct--taacatttgttttcctgtatc--tacatcttttcttacctag------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 5'ss of exon 6
CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtgtaattatgttcttgttcctggatgtttcttttttaaaaaaaaaaaaaagtaaaaagaaaaactatgatcctatgatataatgcattgatgcaactgttatcatctcttttcag
 ||||||||||| || ||||| || ||||| ||||||||   ||||||||| ||||| || ||||| ||||| ||||| || |||||||| || ||||||||||      | ||      |||    ||| |   |||   |  |  |         | ||    |    | ||  ||  ||||   || ||||   ||||   ||          
TCAGATATTTGAGGGACATTCGCACTATGTGATGCAAGTGGTATTTAATCCAAAAGATACCAACACTTTTGCCAGTGCTTCGCTTGATCGTACCATAAAGgtgtgtaagaggtccaagcactgagcttttatggcttagttagcacgaggtacttttaaaagggtt----ttcttagac-taatt--ttcatgc--ttgttcatattcag------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 6
CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtgtaattatgttcttgttcctggatgtttcttttttaaaaaaaaaaa--aaagtaaaaagaaaaactatgatcctatgatataatgcattgatgcaactgttatcatctcttttcag
 ||||| ||||| || || ||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||| ||||||||||| ||||| || || ||||| | ||  ||   ||  |  |||    || ||   |  |       |  ||  |      |  || |||||   |   || || |||  |||||       |||| ||  ||| |||
TCAGATCTTTGAGGGCCACTCTCATTATGTGATGCAAGTGACATTTAATCCAAAAGATACCAACACTTTTGCTAGTGCATCTCTGGATCGCACCATTAAGgtatgatc-tggattttctgttggcaacttgttaactgcatttttttaccaattttgcttcatcaagtatgagtgtgctattta-tgctctgatga------tatc-tccttttccag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 6
CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtgtaattatgttcttgttcctggatgtttcttttttaaaaaaaaaaaaaagtaaaaagaaaaactat-gatcctatgatataatgcattgatgcaactgttatcatctcttttcag
 ||||| |||||||| |||||||| || || |||||||| ||||||||||| |||||||| ||||||||||||||||| || || ||||| || |||||||||| |   ||    |||| || |||      || | ||    || |     |  || |    | | | ||||||   |||       |||||   | || |    |          
TCAGATTTTTGAAGGGCATTCTCACTACGTGATGCAAGTGACATTTAATCCAAAAGACACCAACACCTTTGCAAGTGCCTCCCTCGATCGCACTATAAAGgtgtga--gtggaaatgtttcttgataacctgttgtgaacttgaagatgtgtttcaatgtcctaatgttgatccttccata------gttgattttattgattgtgtg---------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S79_180V6.2 (Physcomitrella patens), 5'ss of exon 6
CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtg------taatta-------tgttcttgttcctgga-tgtttcttttttaaaaaaaaaaaaaagtaaaaagaaaaactatgatccta-tgatataatgcattgatgcaactgttatcatctcttttcag--------------------------------------------------------------
 || || || ||||| || ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||| ||| | ||||| ||  | ||||||       | ||         |||  | || ||| | | ||   | | |  ||| |  | ||| | | | |      |||| |  ||    ||      ||| | |||||     ||| ||  | | ||                                                              
TCAAATTTTCGAAGGGCACTCTCATTATGTCATGCAAGTAACGTTTAATCCCAAAGACAGCAACACCTTTGCAAGTGCTTCTTTGGATCGAACTGTGAAGgtgaggtaccagttggttccgtcgtttatttttctgcagtattagctgtcttgaaatattacaaaatcatagggttccttatgctaatagctttaccccatattcaagcaacgaagttcaactgatgtaagattgtcttccaagacaatagaacaaaacgatggcttaattgtatggactgtctttttaacag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S243_63V6.1 (Physcomitrella patens), 5'ss of exon 6
CCAGATATTTGAAGGTCATTCTCATTATGTCATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCAAGTGCATCTCTTGATCGGACAATAAAGgtgtaat--tatgttctt----gttcctggatgtttcttttttaaaaaaaaaaa-------aaagtaaaaagaaaaactatgatcc--------tatgatataatgcattgatgcaac--tgttatcatctcttttcag--------------------------------------
|||||| |||||||| ||||||||||||||||||||||| || || |||||||||||||  ||||| |||||||| || ||  | ||||| ||  | ||||||  ||  ||||| |||    |||| |  ||     || | ||   ||| |||       |||  |||| ||| |  | | ||||        | |  |  ||||| ||  |       |||| | | |   | ||                                        
CCAGATCTTTGAAGGACATTCTCATTATGTCATGCAAGTGACTTTCAATCCCAAAGACAGTAACACTTTTGCAAGCGCTTCCTTGGATCGAACTGTTAAGgtgagatattatgtgcttcgatgttcttctattggcattatgtacgtaaagaaattctatgaaaaaaaaaggaagagttttaatccactcgacttgttgtggaatgcttttttagggtagtgttctaaacgtatatcgccatattgagttgatcagatgagctctgtctttgtatag